View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_82 (Length: 290)
Name: NF11180A_low_82
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_82 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 20816837 - 20816572
Alignment:
| Q |
18 |
caagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccatagagtcaaaatgcactaaatcgtctatacccaatttcttcaaa |
117 |
Q |
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| T |
20816837 |
caagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgtactaaatcgtctatacccaatttcttcaaa |
20816738 |
T |
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| Q |
118 |
gtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtataaagtctaaagcatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816737 |
gtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtataaagtctaaagcatt |
20816638 |
T |
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| Q |
218 |
tccctggttgtgttcttccagcacgcccagatctctgaaccgcactagcctttgatattggagaca |
283 |
Q |
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| T |
20816637 |
tccctggttgtgttcttccagcacgcccagatctctgaaccgcactagcctttgatattggagaca |
20816572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 38779308 - 38779573
Alignment:
| Q |
18 |
caagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccatagagtcaaaatgcactaaatcgtctatacccaatttcttcaaa |
117 |
Q |
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|||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| |||||||||| |||||||| |||||||||| ||||||||| |
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| T |
38779308 |
caagtaattcaacacttccaaagcacgcatcaaggtttcaggggcaggagggtccatgaagtcaaaatgaactaaatcatctatacccagtttcttcaat |
38779407 |
T |
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| Q |
118 |
gtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtataaagtctaaagcatt |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38779408 |
gtaagaactgtgttggcaagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttcggtataaagtctaaagcatt |
38779507 |
T |
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| Q |
218 |
tccctggttgtgttcttccagcacgcccagatctctgaaccgcactagcctttgatattggagaca |
283 |
Q |
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|||| || || |||||||||||||| ||||| ||||| |||||||| |||||||||||||||| |
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| T |
38779508 |
tccccggctgagttcttccagcacgtccagacctctggtgtgcactagcttttgatattggagaca |
38779573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 33388268 - 33388532
Alignment:
| Q |
19 |
aagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccatagagtcaaaatgcactaaatcgtctatacccaatttcttcaaag |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||| |||||||| |||||||||||||||||||| | |
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| T |
33388268 |
aagtaattcaacacttccaaagcacgcattaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatg |
33388367 |
T |
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| Q |
119 |
taagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtataaagtctaaagcattt |
218 |
Q |
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||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||| |||||| ||||||| |
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| T |
33388368 |
taagaaccgtgtttgcaagattagatctcaaaatttcaggataggtctgcggctgaagatcattactgaaacttatttcggtatagagtctatagcattt |
33388467 |
T |
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| Q |
219 |
ccctggttgtgttcttccagcacgcccagatctctgaaccgcactagcctttgatattggagaca |
283 |
Q |
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||| ||||| |||||||| ||||| || |||||||| ||||||||||||||||||||||||| |
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| T |
33388468 |
ccccggttgagttcttccggcacgacctgatctctggtgtgcactagcctttgatattggagaca |
33388532 |
T |
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