View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11180A_low_89 (Length: 284)
Name: NF11180A_low_89
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_89 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 6300868 - 6300929
Alignment:
| Q |
138 |
aatcagttcgtattccaactataatggccattgggaaaacgaaacattagtggcttatagca |
199 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6300868 |
aatcagtttgtattccaactataatggccattgggaaaatgaaacattagtggcttatagca |
6300929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 6307678 - 6307739
Alignment:
| Q |
138 |
aatcagttcgtattccaactataatggccattgggaaaacgaaacattagtggcttatagca |
199 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6307678 |
aatcagtttgtattccaactataatggccattgggaaaatgaaacattagtggcttatagca |
6307739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University