View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11180A_low_90 (Length: 283)
Name: NF11180A_low_90
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_90 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 4322643 - 4322919
Alignment:
| Q |
1 |
tatacgtgaccttatatcctctttaaatgtaattgatagcaacaagttctcctgtcttcttgtctttagccaacctagtcactccaaagtttccagaacc |
100 |
Q |
| |
|
||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4322643 |
tatacttgaccttatatcctctttcaatgtatttgatagcaacaagttctcctgtctttttgtctttagccaacctagtcactccaaagtttccagaacc |
4322742 |
T |
|
| Q |
101 |
aaggtccttcaatatctcggatctttcctcctccatttcacagtccaaataatactgttcaagtgacgatccaatgataaaaatgaatgaaaaataagtg |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
4322743 |
aaggtccttcaatatctcgtatctttcctcctccatttcacagtccaaataatactgttcaattgacgatccaatgataaaaatgaataaaacataagtg |
4322842 |
T |
|
| Q |
201 |
atttagtcaaaactgagataacattgtaatgaaaatgagaaggagaaaaatgtgaattagaaattagacaaagaaaa |
277 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4322843 |
atttagtcaaaactgaaataacattgtaatgaaaatgagaaggagaaaaatgtgaattagaaattagacaaagaaaa |
4322919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 41124498 - 41124412
Alignment:
| Q |
27 |
atgtaattgatagcaacaagttctcctgtcttcttgtctttagccaacctagtcactccaaagtttccagaaccaaggtccttcaat |
113 |
Q |
| |
|
||||| |||| |||||||||||| || || || ||||||||||||||||||| || ||||| |||||||||||||| ||||||||| |
|
|
| T |
41124498 |
atgtatttgagagcaacaagttccccagtatttttgtctttagccaacctagcaacaccaaaatttccagaaccaagttccttcaat |
41124412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University