View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_91 (Length: 283)
Name: NF11180A_low_91
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_91 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 30316047 - 30315779
Alignment:
| Q |
5 |
tagtagcatagatgagtattatgagnnnnnnn-tagtagcaagtgaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaact |
103 |
Q |
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| T |
30316047 |
tagtagcatagatgagtattatgagaaaaaaaatagtagtaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaact |
30315948 |
T |
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| Q |
104 |
ctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaag |
203 |
Q |
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| T |
30315947 |
ctagttacaattacaagataatgccgttttattctttgctcactatgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaag |
30315848 |
T |
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| Q |
204 |
ctcccaaaattgaagaaataggctccctttttctctggcttcgaccttcttccctttccttttgttgag |
272 |
Q |
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| T |
30315847 |
ctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttcttccctttccctttgttgag |
30315779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 37 - 272
Target Start/End: Complemental strand, 30305147 - 30304913
Alignment:
| Q |
37 |
tagtagcaagtgaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttatt |
136 |
Q |
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|||||||||| |||||||| |||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30305147 |
tagtagcaagagaggtggctcaaaacttattcttgattcagttattcatagtagaaa-ggtggaactctagttatagttacaagataatgccgttttatt |
30305049 |
T |
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| Q |
137 |
ctttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttc |
236 |
Q |
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| T |
30305048 |
catcgctcattattagctatagctccatatatcatacttgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtc |
30304949 |
T |
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| Q |
237 |
tctggcttcgaccttcttccctttccttttgttgag |
272 |
Q |
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| T |
30304948 |
tctggcttcgaccttcttccctttccctttgttgag |
30304913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 48 - 272
Target Start/End: Complemental strand, 30287462 - 30287245
Alignment:
| Q |
48 |
gaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcact |
147 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||| ||||||||||||| |||| | |
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| T |
30287462 |
gaggaggcacaaaacttattcttgattaatttattcatagtagaaa-ggaggaactctagtta------caagataatgccgttttattcttttctcatt |
30287370 |
T |
|
| Q |
148 |
atgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcga |
247 |
Q |
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| T |
30287369 |
atgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcga |
30287270 |
T |
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| Q |
248 |
ccttcttccctttccttttgttgag |
272 |
Q |
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| T |
30287269 |
ccttcttccctttccctttgttgag |
30287245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 37 - 272
Target Start/End: Complemental strand, 30300349 - 30300121
Alignment:
| Q |
37 |
tagtagcaagtgaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttatt |
136 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| || ||||||| || ||||||||| |
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| T |
30300349 |
tagtagtaagagaggtggcacaaaacttattcttgattaatttattcatggtggaaa-ggtggaactctagata------caagatattgccgttttatt |
30300257 |
T |
|
| Q |
137 |
ctttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttc |
236 |
Q |
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|| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| || |
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| T |
30300256 |
ctctgctcactatgagctatgactccttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctccctttgtc |
30300157 |
T |
|
| Q |
237 |
tctggcttcgaccttcttccctttccttttgttgag |
272 |
Q |
| |
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| T |
30300156 |
tctggcttcgaccttcttccctttccctttgttgag |
30300121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 272
Target Start/End: Complemental strand, 30292485 - 30292279
Alignment:
| Q |
48 |
gaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcact |
147 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||| ||||||||| |
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| T |
30292485 |
gaggtggcacaaaacttgttcttgattaatttattcatagtaggaaag-tggaactctagttatagttacaagctaatgccgttttattcattgctcact |
30292387 |
T |
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| Q |
148 |
atgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcga |
247 |
Q |
| |
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||||| |||| |||||||| ||||||| | |||||||| | |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30292386 |
atgag---------cttagagcatacaagcataat--------aagcattaaaacgttcccgaaattgaagaaataggctccctttttctctggcttcga |
30292304 |
T |
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| Q |
248 |
ccttcttccctttccttttgttgag |
272 |
Q |
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||||||||||||||| ||||||||| |
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| T |
30292303 |
ccttcttccctttccctttgttgag |
30292279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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