View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_92 (Length: 281)
Name: NF11180A_low_92
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_92 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 101 - 269
Target Start/End: Complemental strand, 41760655 - 41760487
Alignment:
| Q |
101 |
attagaatgtaatcaatttccgacaatttatctccctcgtcatcatgtgcatcaaatagttcaacttcttctccttgttcttcgtctatgaaaattatat |
200 |
Q |
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| T |
41760655 |
attagaatgtaatcaatttccgacaatttatctccctcatcatcatgtgcatcaaatagttcaacttcttctccttgttcttcgtctatgaaaattatat |
41760556 |
T |
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| Q |
201 |
tttcaatattttcttcgacttctgtagaacatgctttaatttctatttcttcctctgcttcggcatttt |
269 |
Q |
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| T |
41760555 |
tttcaatattttcttcgacttctgtagaacatgctttaatttctatttcttcctctgcttcggcatttt |
41760487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 41795456 - 41795385
Alignment:
| Q |
101 |
attagaatgtaatcaatttccgacaatttatctccctcgtcatcatgtgcatcaaatagttcaacttcttct |
172 |
Q |
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|||||||||||||||||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||| |
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| T |
41795456 |
attagaatgtaatcaatttccgaccctttatctccgtcttcatcatctgcatcaaatagttcaacttcttct |
41795385 |
T |
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