View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_98 (Length: 276)
Name: NF11180A_low_98
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_98 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 6466603 - 6466336
Alignment:
| Q |
9 |
gagaagaagagcaaaacaaatgcaaagattccagcttcgcaaacaataatcataagcattagttcataacaatctatattgtattgnnnnnnnnttacca |
108 |
Q |
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| T |
6466603 |
gagaacaagagcaaaacaaatgcaaagattccagcttcgcaaacaataatcataagcattagttcataacaatctatattgtattgaaaaaaaattacca |
6466504 |
T |
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| Q |
109 |
atcgtgaaggtttgatttaacatcatacgtccatcttcattgtttcctgaaaataaaaatagtaagaataattgttacaaacataactctgaaatatttt |
208 |
Q |
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| T |
6466503 |
atcgtgaaggtttgatttaacatcatacgtccatcttcattgtttcctgaaaataaaaatagtaagaataattgttacaaacataactctgaaatatttt |
6466404 |
T |
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| Q |
209 |
gaggtttggagaaaaagtattgaaagattatgaaatgtttttaatataaaataagggtcgctaactga |
276 |
Q |
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| T |
6466403 |
gaggtttggagaaaaagtattgaaagattatgaaatgtttttaatataaaataagggtcgctaactga |
6466336 |
T |
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