View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180_high_3 (Length: 441)
Name: NF11180_high_3
Description: NF11180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 24979697 - 24979941
Alignment:
| Q |
11 |
gagatgaacaaccaccacgccgtagagaacaccgaagcaaaacaccaccaccaatcccaaaacccagcaaaacacgacatgtgagaggttgggagagatg |
110 |
Q |
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| T |
24979697 |
gagatgaacaacc-ccacgccgtagagaacaccgaagcaaaacaccaccaccaatcctaaaacccagcaaaacacggcatgtgagaggttgggagagagg |
24979795 |
T |
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| Q |
111 |
gagaagcaagcaactcctaagatcagcggataaaagcgacaaaaacaaaggagaaagggtcacgcttttctggagttagttaatctgccgagagnnnnnn |
210 |
Q |
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| T |
24979796 |
gagaagcaagcaactcctaagatcagcggataaaagcgataaaaacaaaggagaaagggtcacgctttgccggagttagttaatctgccgagagaaaaaa |
24979895 |
T |
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| Q |
211 |
ncggttatggaggagaaagagaatttcggtggaacatttttctttt |
256 |
Q |
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| T |
24979896 |
acggttatggaggagaaagagaatttccgtggaacatttttctttt |
24979941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 248 - 441
Target Start/End: Original strand, 24980349 - 24980542
Alignment:
| Q |
248 |
ttttctttttgatcttgaagtgaataacttgaaaataagattaaattgttaagggtaaatttgtagtaggaaaactattcacctaaaaaacagttagttt |
347 |
Q |
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| T |
24980349 |
ttttctttttgatcttgaagtgaataacttgaaaataagattaaattgttaagggtaaatttgtagtaggaaaaatattcacctaaaaaacagttaattt |
24980448 |
T |
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| Q |
348 |
tccatattccacataatcatgatgtaaatttaaatttaattttaggaaagagttatgnnnnnnnnagaggagaaaagaattttcttaagcgtaa |
441 |
Q |
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| T |
24980449 |
tccatattccacataatcatgatgtaaatttaaatttaattttaggaaagagttatgttttttttagaggagaaaagaattttcttaagcgtaa |
24980542 |
T |
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