View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180_high_5 (Length: 350)
Name: NF11180_high_5
Description: NF11180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 48290899 - 48290558
Alignment:
| Q |
1 |
tccttttattggccaaaattgatgaaattaattaaatgtgaagaaggtttgagaaaacagaaaattaaagaggtagatgttgataataagaaatataaga |
100 |
Q |
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| T |
48290899 |
tccttttattggtcaaaattgatgaaattaattaaatgtgaagaaggtttgagaaaacagaaaattaaagaggtagatgttgataataagaaatataaga |
48290800 |
T |
|
| Q |
101 |
agcgttcaaagcttgcaatgagtggtgtaaatggaaagggacatgaagaaagagatgtagcatctttaatctagttataattaatagtaaattgattata |
200 |
Q |
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| T |
48290799 |
agcgttcaaagcttgcaatgagtggtgtaaatggaaagggacatgaagaaagagatgtagcatctttaatctagttataattaatagtaaattgattata |
48290700 |
T |
|
| Q |
201 |
gcttagcttgcaaaaatcacaattagccaacactactgccttttttggttgataatgtctaaacttttagggcatttcatttcatttaattgataacatc |
300 |
Q |
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| T |
48290699 |
gcttagcttgcaaaaatcacaattagccaacactactgccttttttggttgataatgtctaaacttttagggcatttcatttcatttaattgataacatc |
48290600 |
T |
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| Q |
301 |
aaccactgtatttgctttcatcaacgttagctcattcatctc |
342 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48290599 |
aaccactgtaattgctttcatcaacgttagctcattcatctc |
48290558 |
T |
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