View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11180_high_9 (Length: 279)
Name: NF11180_high_9
Description: NF11180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180_high_9 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 44729612 - 44729880
Alignment:
| Q |
11 |
cagaagtgccaatataacataactaacaattaaaaccaacttaaaccaacaactttcactaatttgaccatattattgatcaaatctttgcaccaataaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44729612 |
cagaagtgccaatataacataactaacaattaaaaccaacttaaaccaacaactttcactaatttgaccatattattgatcaaatctttgcaccaataaa |
44729711 |
T |
|
| Q |
111 |
acttgtaaggaataaccaaccagatatctttctcttaaccttcttttccttaatggtatccaagctaggcttccaccctttccctgataattgcctactc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44729712 |
acttgtaaggaataaccaaccagatatctttctcttaaccttcttttccttaattgtatccaagctaggcttccaccctttccctgataattgcctactc |
44729811 |
T |
|
| Q |
211 |
aaattcaaatactctgctctttcctccatcatttctggcaaaaactcacaaaaattaaacctctcttct |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44729812 |
aaattcaaatactctgctctttcctccatcatttctggcaaaaactcacaaaaattaaacctctcttct |
44729880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 39084314 - 39084251
Alignment:
| Q |
151 |
ttcttttccttaatggtatccaagctaggcttccaccctttccctgataattgcctactcaaat |
214 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||| | |||||| |||||| |
|
|
| T |
39084314 |
ttcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaat |
39084251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University