View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11180_low_1 (Length: 540)

Name: NF11180_low_1
Description: NF11180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11180_low_1
NF11180_low_1
[»] chr1 (1 HSPs)
chr1 (32-540)||(48545714-48546222)


Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 32 - 540
Target Start/End: Complemental strand, 48546222 - 48545714
Alignment:
Q  32 acaaactagactcacacgttacaactcaaagtagaaaatgatgatagacaaaaggacaggcactaataagagaggctgaggaaagaaggtaaaatcacct 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48546222 acaaactagactcacacgttacaactcaaagtagaaaatgatgatagacaaaaggacaggcactattaagagaggctgaggaaagaaggtaaaatcacct 48546123  T
Q  132 gccgtgtatcttcatatgacaaaaatgtttcccaaccttcatttgccatataatcacgacgaacaagttccacctcttctggtttaatttggtgatgaat 231  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48546122 gccgtgtatcttcgtatgacaaaaatgtttcccaaccttcatttgccatataatcacgacgaacaagttccacctcttctggtttaatttggtgatgaat 48546023  T
Q  232 atcctacaaagaaccacagaatgtcggttggtgctccaaaataatactggttaacaaagtgtgtcaagatttaaaaatcttagttaaataaaatttccag 331  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48546022 atcctacaaagaaacacagaatgtcggttggtgctccaaaataatactggttaacaaagtgtgtcaagatttaaaaatcttagttaaataaaatttccag 48545923  T
Q  332 acgagattggttctagataattacctggattccagcttctctggtgcgaacatcacgacattttaaacccaagtcttccattcgagctaatgctaactcc 431  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48545922 acaagattggttctagataattacctggattccagcttctctggtgcgaacatcacgacattttaaacccaagtcttccattcgagctaatgctaactcc 48545823  T
Q  432 cttagattccctttctcaaccccagaggtcaccaaaggcattggaatatcccgctgaactctataaacacgtgtccatggaggtaccattgcaaggatcc 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48545822 cttagattccctttctcaaccccagaggtcaccaaaggcattggaatatcccgctgaactctataaacacgtgtccatggaggtaccattgcaaggatcc 48545723  T
Q  532 ttgctatga 540  Q
    |||||||||    
T  48545722 ttgctatga 48545714  T

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