View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180_low_6 (Length: 326)
Name: NF11180_low_6
Description: NF11180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 25382001 - 25382321
Alignment:
| Q |
1 |
attctatttttgaaagaacaactccagattctaaaattaaaatttatttccagagtaacaaaagggttctcgatcaaaatctttccaagttatgaacaac |
100 |
Q |
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| T |
25382001 |
attctatttttgaaagaacaactccagattctaaaattaaaatttatttccagagtaacaaaagggttctcgatcaaaatctttccaagttatgaacaac |
25382100 |
T |
|
| Q |
101 |
ta----gtggtggcggtggtatgttgagctatgttttagagacgatgatgatgatgaataagacaagttgatatgattaaatctggatttacagaacacg |
196 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25382101 |
taactagtggtggcggtggtatgttgagctatgttttagagacgatgatgatgatgaataaga--agttgatatgattaaatctggatttacagaacacg |
25382198 |
T |
|
| Q |
197 |
gtaatagaggatggagatgattgatgaatacaataatgttgtgcttctgggtttttcaacccctcatgttcatagaaacccagttttatacccataacaa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25382199 |
gtaatagaggatggagatgattgatgaatacaataatgttgtgcttctgggtttttcaacccctcatgttcatagaaacccagttttatacccataacaa |
25382298 |
T |
|
| Q |
297 |
gatgatgaattgtactctctgct |
319 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
25382299 |
gatgatgaattgtactccctgct |
25382321 |
T |
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