View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11181_high_2 (Length: 371)
Name: NF11181_high_2
Description: NF11181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11181_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 11459975 - 11459637
Alignment:
| Q |
20 |
caatagtttaacaaagagattagcactcaacaccaattgagctaatcggattattatcaagacgtcagttgctaataacctttcgaaaatgtagacacaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11459975 |
caatagtttaacaaagagattagcactcaacaccaattgagctaatcggattattatcaagacgtcacttgctaataacctttcgaaaatgtagacacaa |
11459876 |
T |
|
| Q |
120 |
attctgggtaagcttgaactgttctatatatataccttacaatgtccagcaagcatggcatatattagccgaaatacaatgcaaagataataaaaactgg |
219 |
Q |
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| T |
11459875 |
attctgggtaagcttgaactgttctatctctaca--ttacaatgtccagcaagcatggcatatat-agccgaaatacaatgcaaagataataaaaactga |
11459779 |
T |
|
| Q |
220 |
taataaagtacagcataaaaggcaattatactaatactaaaatgacattattccctcagctatgtaactcctgctccaatgactggctgggcgaaattaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11459778 |
taataaagtacagcataaaaggcaattatactaatactaaaatgacattattccatcagctatgtaactcctgttccaatgactggctgggcgaaattaa |
11459679 |
T |
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| Q |
320 |
ggccttgaatttgtctttaatgctccttattttgctcctttg |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
11459678 |
ggccttgaatttgtctttaatgctccttattttgctcctttg |
11459637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 11464957 - 11464619
Alignment:
| Q |
20 |
caatagtttaacaaagagattagcactcaacaccaattgagctaatcggattattatcaagacgtcagttgctaataacctttcgaaaatgtagacacaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11464957 |
caatagtttaacaaagagattagcactcaacaccaattgagctaatcggattattatcaagacgtcacttgctaataacctttcgaaaatgtagacacaa |
11464858 |
T |
|
| Q |
120 |
attctgggtaagcttgaactgttctatatatataccttacaatgtccagcaagcatggcatatattagccgaaatacaatgcaaagataataaaaactgg |
219 |
Q |
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||||||||||||||||||||||||||| | || | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11464857 |
attctgggtaagcttgaactgttctatctctaca--ttacaatgtccagcaagcatggcatatat-agccgaaatacaatgcaaagataataaaaactga |
11464761 |
T |
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| Q |
220 |
taataaagtacagcataaaaggcaattatactaatactaaaatgacattattccctcagctatgtaactcctgctccaatgactggctgggcgaaattaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11464760 |
taataaagtacagcataaaaggcaattatactaatactaaaatgacattattccatcagctatgtaactcctgttccaatgactggctgggcgaaattaa |
11464661 |
T |
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| Q |
320 |
ggccttgaatttgtctttaatgctccttattttgctcctttg |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
11464660 |
ggccttgaatttgtctttaatgctccttattttgctcctttg |
11464619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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