View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11181_high_3 (Length: 368)
Name: NF11181_high_3
Description: NF11181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11181_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 113 - 335
Target Start/End: Complemental strand, 7735693 - 7735471
Alignment:
| Q |
113 |
atgctaaacaattttcttaatgagacttgtgagtgattccaaaataaaaaatatatttgatgtgttttaggtagnnnnnnngttgcttttaaatatcgag |
212 |
Q |
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| T |
7735693 |
atgctaaacaattttcttaatgagacttgtgagtgattccaaaagaaaaaatatatttgatgtgttttaggtagaaaaaaagttgcttttaaatatggag |
7735594 |
T |
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| Q |
213 |
tctttgtaaagagtgtcataagagcatttttaaggaatttaaattaagaaacggaaatgcttcttatagcaaaaatctatctcacggagttttatcctca |
312 |
Q |
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| T |
7735593 |
tctttgtaaagagtgtcataagagcatttttaaggaatttaaattaagaaacggaaatgcttcttatagcaaaaatctatctcacgaagttttatcctca |
7735494 |
T |
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| Q |
313 |
agagttggacttcatattagcta |
335 |
Q |
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| T |
7735493 |
agagttgcacttcatattagcta |
7735471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 7735759 - 7735678
Alignment:
| Q |
17 |
aattatgaccaaaatttcttttgaaaattttctcatatctagtttctcggtgggagtactaaggtcatgctaaacaattttc |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7735759 |
aattatgaccaaaatttcttttgaaaattttctcatatctagtttctcggtgggagtactaaggtcatgctaaacaattttc |
7735678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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