View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11181_high_5 (Length: 241)

Name: NF11181_high_5
Description: NF11181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11181_high_5
NF11181_high_5
[»] chr7 (2 HSPs)
chr7 (31-225)||(29901661-29901857)
chr7 (31-225)||(29887293-29887489)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 29901857 - 29901661
Alignment:
Q  31 atagaccagttgacaatgcaacttgggaggacaaggaaataattcagcagcggtttcctgacgtcaacctttaggaaaaggttgttcaaggggccaatgg 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29901857 atagaccagttgacaatgcaacttgggaggacaaggaaataattcagcagcggtttcctgacgtcaacctttaggaaaaggttgttcaaggggccaatgg 29901758  T
Q  131 tat--tttggcaccagaataaacccacacaattactctcattatctgttacaaagttttgaagttaacaaaaatattgtttgcttgaagaaataaag 225  Q
    |||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29901757 tattgtttggcaccagaataaacccacacaattacactcattatctgttacaaagttttgaagttaacaaaaatattgtttgcttgaagaaataaag 29901661  T

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Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 29887489 - 29887293
Alignment:
Q  31 atagaccagttgacaatgcaacttgggaggacaaggaaataattcagcagcggtttcctgacgtcaacctttaggaaaaggttgttcaaggggccaatgg 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29887489 atagaccagttgacaatgcaacttgggaggacaaggaaataattcagcagcggtttcctgacgtcaacctttaggaaaaggttgttcaaggggccaatgg 29887390  T
Q  131 tat--tttggcaccagaataaacccacacaattactctcattatctgttacaaagttttgaagttaacaaaaatattgtttgcttgaagaaataaag 225  Q
    |||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29887389 tattgtttggcaccagaataaacccacacaattacactcattatctgttacaaagttttgaagttaacaaaaatattgtttgcttgaagaaaaaaag 29887293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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