View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11181_low_2 (Length: 643)
Name: NF11181_low_2
Description: NF11181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11181_low_2 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 18 - 634
Target Start/End: Complemental strand, 45420226 - 45419590
Alignment:
| Q |
18 |
atacccaccagcaccaaatgtgcaaagacaagcaagagaagacattcaagttgatgatgtaacagtgcctaatggaaccaacatgtggattgatttagta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45420226 |
atacccaccagcaccaaatgtgcaaagacaagcaagagaagacattcaagttgatgatgtaacagtgcctaatggaaccaacatgtggattgatgtagta |
45420127 |
T |
|
| Q |
118 |
gcaatgcaccgtgacccagaattatggggagatgatgggaatgatttcaaaccagagaggttcatggatgatgttaatggtggatgcaaacacaagatgg |
217 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45420126 |
gcgatgcaccatgacccagaattatggggagatgatgtgaatgatttcaaaccagagaggttcatggatgatgttaatggtggatgcaaacacaagatgg |
45420027 |
T |
|
| Q |
218 |
ggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatagtgttaacaatacttctctctaacttcac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45420026 |
ggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatagtgttaacaatacttctctctaacttcac |
45419927 |
T |
|
| Q |
318 |
ttttaaggtttcgccaagttatcaacattcaccagccatcatgctctccctaaggccagctcatggacttcctctcattgttcaaccccttaattaggat |
417 |
Q |
| |
|
|||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45419926 |
ttttaaggtttcgccaggttaccatcattcaccagccatcatgctctccctaaggccagctcatggacttcctctcattgttcaaccccttaattaggat |
45419827 |
T |
|
| Q |
418 |
aatc--tagaggatatcttcaactgaattctacattg--------atgttctttgtttcttagttttatctgtagaagggcataagttgtct-------- |
499 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45419826 |
aatctatagaggatatcttcaactgaattctacactgtaatgtctttgttctttgtttcttagttttatctgtagaagggcataagttgtcttagtctta |
45419727 |
T |
|
| Q |
500 |
--tagtttttcaagctaatatggatttcaggaatccttctaccattgccacaataaagatgtactaaggtttcatctgcaataaaaatgattgacttcac |
597 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
45419726 |
actagtttttcaagctaatatggattttaggtatccttctaccattgccacaataaagatgtactaaggtttcatctgcaataaaaatggttgacttcaa |
45419627 |
T |
|
| Q |
598 |
tgtgacgcatgggcaccacctcccattttcttcttct |
634 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
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| T |
45419626 |
tgtgacgcatgtgcaccacctcccattttcttcttct |
45419590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 45410917 - 45410517
Alignment:
| Q |
18 |
atacccaccagcaccaaatgtgcaaagacaagcaagagaagacattcaagttgatgatgtaacagtgcctaatggaaccaacatgtggattgatttagta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
45410917 |
atacccaccagcaccaaatgtgcaaagacaagcaagagaagatattcaagttgatgatgtaacagtgcctaatggaacaaacatgtggattgatgtagta |
45410818 |
T |
|
| Q |
118 |
gcaatgcaccgtgacccagaattatggggagatgatgggaatgatttcaaaccagagaggttcatggatgatgttaatggtggatgcaaacacaagatgg |
217 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45410817 |
gcgatgcaccatgacccagaattatggggagatgatgtgaatgagttcaaaccagagaggttcatggatgatgttaatggtggatgcaaacacaagatgg |
45410718 |
T |
|
| Q |
218 |
ggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatagtgttaacaatacttctctctaacttcac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45410717 |
ggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatagtgttaacaatacttctctctaacttcac |
45410618 |
T |
|
| Q |
318 |
ttttaaggtttcgccaagttatcaacattcaccagccatcatgctctccctaaggccagctcatggacttcctctcattgttcaaccccttaattaggat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
45410617 |
ttttaaggtttcgccaagttatcaacattcaccagccatcatgctctccctaaggccagctcatggacttccactcattgttcaaccccttaattaggat |
45410518 |
T |
|
| Q |
418 |
a |
418 |
Q |
| |
|
| |
|
|
| T |
45410517 |
a |
45410517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 29799980 - 29799598
Alignment:
| Q |
19 |
tacccaccagcaccaaatgtgcaaagacaagcaagagaagacattcaagttgatgatgtaacagtgcctaatggaaccaacatgtggattgatttagtag |
118 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||| | |||||||||||| || ||||| || ||||| | |||||||| ||||| |||||||| || | || | |
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|
| T |
29799980 |
tacccaacagcaccaaatgttcaaaggcaatctagagaagacattaaacttgataatctaacaattcctaatgggaccaatatgtggatcgacgttgttg |
29799881 |
T |
|
| Q |
119 |
caatgcaccgtgacccagaattatggggagatgatgggaatgatttcaaaccagagaggttcatggatgatgttaatggtggatgcaaacacaagatggg |
218 |
Q |
| |
|
||||||||| |||| || ||| |||||||| ||| ||||| || |||||| || |||||||||||||| |||||||||||||| || || ||||| |
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|
| T |
29799880 |
caatgcaccatgactcatcattgtggggagaaaatgtaaatgagtttcgaccagaaagattcatggatgatgtaaatggtggatgcaaccaaaaaatggg |
29799781 |
T |
|
| Q |
219 |
gtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatagtgttaacaatacttctctctaacttcact |
318 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||| || | | |
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|
| T |
29799780 |
atacttaccttttggatttggaggaagaatgtgtgttggtagaaacttgagctttatggagtataagatagtgttaacccttcttctctctagatttagt |
29799681 |
T |
|
| Q |
319 |
tttaaggtttcgccaagttatcaacattcaccagccatcatgctctccctaaggccagctcatggacttcctctcattgttca |
401 |
Q |
| |
|
||||| |||| |||| |||| |||||||| || |||||||| |||||||||||| ||||||||||||| || ||||| |
|
|
| T |
29799680 |
tttaatatttccccaaattatattcattcaccttgtattatgctctcactaaggccagcttatggacttcctctaatcgttca |
29799598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 26835417 - 26834986
Alignment:
| Q |
18 |
atacccaccagcaccaaatgtgcaaagacaagcaagagaagacattcaagttgatgatgtaacagtgcctaatggaaccaacatgtggattgatttagta |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26835417 |
atacccaccatcaccaaatgtgcaaagacaaacaagagaagacattaaagttgataatgtaacagtgcctaatggaaccaacatgtggattgatgtagta |
26835318 |
T |
|
| Q |
118 |
gcaatgcaccgtgacccagaattatggggagatgatgggaatgatttcaaaccagagaggttcatggatgatgttaatggtggatgcaaacacaagatgg |
217 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
26835317 |
gcaatgcaccatgaccctgaattatggggagatgatgtgaatgagttcaaaccagagaggttcgtcgatgatgttaatggtggatgcaaacacaagatgg |
26835218 |
T |
|
| Q |
218 |
ggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatagtgttaacaatacttctctctaacttcac |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
26835217 |
ggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatagtattaacaatgcttctctctaacttcac |
26835118 |
T |
|
| Q |
318 |
ttttaaggtttcgccaagttatcaacattcaccagccatcatgctctccctaaggccagctcatggacttcctctcattgttcaaccccttaattaggat |
417 |
Q |
| |
|
|||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26835117 |
ttttaaggtttcgccaggttaccatcattcaccagccatcatgctctccctaaggccagctcatggacttcctctcattgttcaaccccttaattaggat |
26835018 |
T |
|
| Q |
418 |
aatctagaggatatcttcaactgaattctaca |
449 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |
|
|
| T |
26835017 |
aatctagaggatatcttcaactcaattctaca |
26834986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 500 - 634
Target Start/End: Complemental strand, 26834946 - 26834812
Alignment:
| Q |
500 |
tagtttttcaagctaatatggatttcaggaatccttctaccattgccacaataaagatgtactaaggtttcatctgcaataaaaatgattgacttcactg |
599 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26834946 |
tagtttttcaagctaatatggattttaggaatccttctaccattgccacaataaagatgtactaaggtttcatctgcaataaaaatgattgacttcactg |
26834847 |
T |
|
| Q |
600 |
tgacgcatgggcaccacctcccattttcttcttct |
634 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26834846 |
tgacgcatgtgcaccacctcccattttcttcttct |
26834812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 63743 - 63457
Alignment:
| Q |
19 |
tacccaccagcaccaaatgtgcaaagacaagcaagagaagacattcaagttgatgatgtaacagtgcctaatggaaccaacatgtggattgatttagtag |
118 |
Q |
| |
|
||||||||| | |||||||||||||| ||||| | || || |||| ||| ||| || ||| |||||||| || |||||||| |||||||| | |||| |
|
|
| T |
63743 |
tacccaccatctccaaatgtgcaaaggcaagctaaggaggatattcgagtagataatataaaggtgcctaaagggaccaacatttggattgacgttgtag |
63644 |
T |
|
| Q |
119 |
caatgcaccgtgacccagaattatggggagatgatgggaatgatttcaaaccagagaggttcatggatgatgttaatggtggatgcaaacacaagatggg |
218 |
Q |
| |
|
||||||||| |||| ||||||||| |||||| || | || |||||||||||||||||| |||||| ||||| | |||| | |||| ||||| |
|
|
| T |
63643 |
caatgcaccatgacatgacattatgggggaatgatgcaaacaagtttaaaccagagaggttcatgaatgatgccaatggggaatgccaccacacaatggg |
63544 |
T |
|
| Q |
219 |
gtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtacaagatagtgttaacaatacttct |
305 |
Q |
| |
|
||| || |||||||| |||||||||||| ||| ||||||| ||||||| || |||||||| || ||||||||||| ||||||| |
|
|
| T |
63543 |
gtacttgccttttggttttggagggagagcatgtattggtaggaacttgatcttcatggagtataacatagtgttaaccctacttct |
63457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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