View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11181_low_9 (Length: 241)
Name: NF11181_low_9
Description: NF11181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11181_low_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 682499 - 682271
Alignment:
| Q |
13 |
acatcagaacatcaatgttgaattattaatactacctatgatgtataacatcatgaggaaaaaattattgctgggtgaaaattcatttcagacaacatgt |
112 |
Q |
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| T |
682499 |
acatcagaacatcaatgttgaattattaatactacctatgatgtataacatcatgaggaaaaaattattgctgggtgaaaattcatttcagacaacatgt |
682400 |
T |
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| Q |
113 |
gttgttcttttgaaaaatcactatagctcacacaagcacccnnnnnnnnngaagcaaaatacagagcagtgagcacaacattttgtcactgtggccctgt |
212 |
Q |
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| T |
682399 |
gttgttcttttgaaaaatcactatagctcacaaaagcacccaaaaaaaaagaagcaaaatacagagcagtgagcacaacattttgttactgtggccctgt |
682300 |
T |
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| Q |
213 |
attgacaccaatgaagtaacttaaattcc |
241 |
Q |
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| T |
682299 |
attgacaccaatgaagtaacttaaattcc |
682271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 682256 - 682204
Alignment:
| Q |
189 |
aacattttgtcactgtggccctgtattgacaccaatgaagtaacttaaattcc |
241 |
Q |
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| T |
682256 |
aacattttgtcactaaaaccctgtcttggcaccaatgaagtaacttaaattcc |
682204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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