View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11182_high_1_N (Length: 523)
Name: NF11182_high_1_N
Description: NF11182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11182_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 14 - 500
Target Start/End: Complemental strand, 50747624 - 50747120
Alignment:
| Q |
14 |
tactaaggttcagaattgacaagagaaagacagttactactcgtaataannnnnnnnnnnnnnnngagaataacgtgtaagcacgtgtcttacatttgga |
113 |
Q |
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| T |
50747624 |
tactaaggttcagaattgacaagagaaagacagttactactcgtaataatttttattttatttttgagaataacgtgtaagcacgtgtcttacatttgga |
50747525 |
T |
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| Q |
114 |
gatagcagtcgatgatttaggatcaaatccaataataagactgagcataggaacgaatatgccaccaccacctacacctccaacacttccaaacgctgct |
213 |
Q |
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| T |
50747524 |
gatagcagtcgatgatttaggatcaaatccaataataagactgagcataggaacgaatatgccaccaccacctacacctccaacacttccaaacgctgct |
50747425 |
T |
|
| Q |
214 |
ccacaaaatccaataaaactacccaacacaatttgccacccaaattccatttcctgcaacaatacaaataaacaaaagaagcactttattatattaccca |
313 |
Q |
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| T |
50747424 |
ccacaaaatccaataaaactacccaacacaatttgccacccaaattccatttcctgcaacaatacaaataaacaaaagaagcactttattatattaccca |
50747325 |
T |
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| Q |
314 |
aagttacaataactgacaaaa-----------------acatatccatagaatgaaggaat-aaactaaatatttatcttttgatttagattcaacttta |
395 |
Q |
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| T |
50747324 |
aagttacaataactgacaaaaacatgtgaaaaacaaaaacatatccatagaatgaaggaataaaactaaatatttatcttttgatttagattcaacttta |
50747225 |
T |
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| Q |
396 |
agataaaacaaagacataaaatccaacagaaaagtgaaatcttaccggccacacgtgttgataacccgatccatctgatttccataagaaattaacagct |
495 |
Q |
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| T |
50747224 |
agataaaacaaagacataaaatccaacagaaaagtgaaatcttaccggccacacgtgttgataacccgatccatctgatttccataagaaattaacagct |
50747125 |
T |
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| Q |
496 |
tttgt |
500 |
Q |
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||||| |
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| T |
50747124 |
tttgt |
50747120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 7568688 - 7568616
Alignment:
| Q |
157 |
agcataggaacgaatatgccaccaccacctacacctccaacacttccaaacgctgctccacaaaatccaataa |
229 |
Q |
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| T |
7568688 |
agcatagggacaaaaattccaccacctcctacacctccaacacttcccaaagctgctcccaaaaatccaataa |
7568616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 8843787 - 8843892
Alignment:
| Q |
101 |
tcttacatttggagatagcagtcgatgatttaggatcaaatccaataat-aagactgagcataggaacgaatatgccaccaccacctacacctccaacac |
199 |
Q |
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| T |
8843787 |
tcttacattttgaaatagcagttgctgattttgcatcaaatccaataatcaaga-ttagcattggaacaaagatgccaccaccaccaactccacctacac |
8843885 |
T |
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| Q |
200 |
ttccaaa |
206 |
Q |
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||||||| |
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| T |
8843886 |
ttccaaa |
8843892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 26959412 - 26959506
Alignment:
| Q |
135 |
atcaaatccaataataagactgagcataggaacgaatatgccaccaccacctacacctccaacacttccaaacgctgctccacaaaatccaataa |
229 |
Q |
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|||||| |||| || |||| | ||||||||||| || |||||||||||||| ||||| ||||| ||||| | |||| |||| |||| ||||||| |
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| T |
26959412 |
atcaaaaccaagaagaagattaagcataggaacaaaaatgccaccaccaccaacaccaccaacggttccacatgctgatccaaaaaaaccaataa |
26959506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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