View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11182_high_4 (Length: 357)
Name: NF11182_high_4
Description: NF11182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11182_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 24696675 - 24697026
Alignment:
| Q |
1 |
atgagaacatgtcccatatgatgtggtgggtcttttctaaatcacagagaaatgcaaatagcagaaaattgaaacatgtcttcttcaagcaatggagagg |
100 |
Q |
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| T |
24696675 |
atgagaacatgtcccatatgaagtggtgggtcttttctaaatcacagagaaatgcaaatagcagaaaattgaaacatgtcttcttcaagcaatggagagg |
24696774 |
T |
|
| Q |
101 |
agctatttgggaaaataatacggtaggactgtataaacagtctgcacaacagcgagaacagagaccaccgttgcaacgaagttgtaattgcggttcaaaa |
200 |
Q |
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| T |
24696775 |
agctatttgggaaaataatacggtaggactgtataaacagtctgcacaacagcgagaacagagaccaccgttgcaacgaagttgtagttgcggttcaaaa |
24696874 |
T |
|
| Q |
201 |
atcttacaacccattcttgacggcatgtgaatgaattccacaccattatccacatctgtttaatgaaaaacgcctcagagttattgatgcaacgaaccat |
300 |
Q |
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| T |
24696875 |
atcttacaacccattcttgacggcatgtgaatgaattccacaccattatccacatctgtttaatgaaaaacgcctcagagttattgatgcaacgaaccat |
24696974 |
T |
|
| Q |
301 |
ttcagtataaatactgtaagcaactactttatggtcaactccctatgctact |
352 |
Q |
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| T |
24696975 |
ttcagtataaatactgtaagcaactactttatggtcaactcccaatgctact |
24697026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 24726526 - 24726767
Alignment:
| Q |
32 |
cttttctaaatcacagagaaatgcaaatagcagaaaattgaaacatgtcttcttcaagcaatggagaggagctatttgggaaaataatacggtaggactg |
131 |
Q |
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| T |
24726526 |
cttttctaaatcacata--aatgcaaatggcagaaaatcaaaatgggcattcttcaggcaatggagaggaactacttgggaaaataatatgcgaggattg |
24726623 |
T |
|
| Q |
132 |
tataaacagtctgcacaacagcgagaacagagaccaccgttgcaacgaagttgtaattgcggttcaaaaatcttacaacccattcttgacggcatgtgaa |
231 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| ||| || ||||||||||||| ||||||| |
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| T |
24726624 |
tataaacagtctgcacaacagcgagaacagagaccaccattgcaacgaagttgtaattgcgattcagaaatgttaaaagccattcttgacggtatgtgaa |
24726723 |
T |
|
| Q |
232 |
tgaattccacaccattatccacatctgtttaatgaaaaacgcct |
275 |
Q |
| |
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||| |||| || || ||||||| ||||||| || |||||||| |
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| T |
24726724 |
cgaagtccaaactgttctccacatttgtttaaagataaacgcct |
24726767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 83 - 206
Target Start/End: Original strand, 24797340 - 24797463
Alignment:
| Q |
83 |
cttcaagcaatggagaggagctatttgggaaaataatacggtaggactgtataaacagtctgcacaacagcgagaacagagaccaccgttgcaacgaagt |
182 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| | ||||| || |||||| ||||||||||||| ||||| | ||| |||||||||||||||| |
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| T |
24797340 |
cttcaagcaatggagaggaattatttgggaaaattataggctaggattgcataaactgtctgcacaacagtgagaataaagagaaccgttgcaacgaagt |
24797439 |
T |
|
| Q |
183 |
tgtaattgcggttcaaaaatctta |
206 |
Q |
| |
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|||||||| ||||||||||||||| |
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| T |
24797440 |
tgtaattggggttcaaaaatctta |
24797463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 24537923 - 24537802
Alignment:
| Q |
83 |
cttcaagcaatggagaggagctatttgggaaaataatacggtaggactgtataaacagtctgcacaacagcgagaacagagaccaccgttgcaacgaagt |
182 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| ||| | ||||| || |||||| ||||||||||||| ||||| ||||| |||||||||||||||| |
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|
| T |
24537923 |
cttcaagcaatggagatgaattatttgggaaaattataggctaggattgcataaactgtctgcacaacagtgagaatagagagaaccgttgcaacgaagt |
24537824 |
T |
|
| Q |
183 |
tgtaattgcggttcaaaaatct |
204 |
Q |
| |
|
||||||||||||||| |||||| |
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| T |
24537823 |
tgtaattgcggttcataaatct |
24537802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 83 - 206
Target Start/End: Original strand, 24826438 - 24826561
Alignment:
| Q |
83 |
cttcaagcaatggagaggagctatttgggaaaataatacggtaggactgtataaacagtctgcacaacagcgagaacagagaccaccgttgcaacgaagt |
182 |
Q |
| |
|
|||||||||||| ||| || ||| ||| || ||||| | | |||||||||||||||||||||||||| |||||||||||| |||| ||||||| ||||| |
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| T |
24826438 |
cttcaagcaatgtagatgaactacttgtgataataaaatgctaggactgtataaacagtctgcacaatagcgagaacagacaccagcgttgcagggaagt |
24826537 |
T |
|
| Q |
183 |
tgtaattgcggttcaaaaatctta |
206 |
Q |
| |
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|||||| | |||||| |||||||| |
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| T |
24826538 |
tgtaatcgtggttcataaatctta |
24826561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 41 - 252
Target Start/End: Original strand, 24854420 - 24854637
Alignment:
| Q |
41 |
atcacagagaaatgcaaatagcagaaaattgaaacatgtcttcttcaagcaatggagaggagcta---tttgggaaaataatacggtaggactgtataaa |
137 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||| | |||||||||||||||||||| | || |||||| |||||||| | || || |||||||| |
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| T |
24854420 |
atcacatagaaatgaaaatagcagaaaatcaaaatgcgccttcttcaagcaatggagagaaattattgtttggggaaataatatgctacgattgtataaa |
24854519 |
T |
|
| Q |
138 |
cagtctgcacaacagcgagaacagagaccaccgttgcaacgaagttgtaattgcggttcaaaaatcttacaacccattcttgac---ggcatgtgaatga |
234 |
Q |
| |
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|||||||||||||| | |||||||| || ||| ||||| ||||||||||| ||||||| |||||||| || ||||| |||| || |||||||||| |
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| T |
24854520 |
cagtctgcacaacaatggaaacagagagcagcgtggcaacaaagttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatga |
24854619 |
T |
|
| Q |
235 |
attccacaccattatcca |
252 |
Q |
| |
|
|||| |||| ||| |||| |
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| T |
24854620 |
attcaacactattttcca |
24854637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 24748238 - 24748314
Alignment:
| Q |
85 |
tcaagcaatggagaggagctatttgggaaaataatacggtaggactgtataaacagtctgcacaacagcgagaacag |
161 |
Q |
| |
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|||||||||||| |||| ||||||||||||| ||| | ||||| || |||||| | |||||||||| |||||||| |
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| T |
24748238 |
tcaagcaatggacaggaattatttgggaaaattataagctaggaatgcataaactatatgcacaacagtgagaacag |
24748314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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