View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11182_high_5 (Length: 340)
Name: NF11182_high_5
Description: NF11182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11182_high_5 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 14332702 - 14332377
Alignment:
| Q |
15 |
tactaggaaatggattaatcatgctaaaagtttgtgctcccaaaaggatatcataaattttggattggacaatctagatgccgagttaagtatgttgcgg |
114 |
Q |
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| T |
14332702 |
tactaggaaatggcttaatcatgctaaaagtttgtgctcccaaaaggatatcataaattttggattggacaatctagatgctgagttaagtatgttgcgg |
14332603 |
T |
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| Q |
115 |
gcgttgttatcagaagaatatcaagagattggtttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaagatcaatcactttaa |
214 |
Q |
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| T |
14332602 |
gcgttgttatcagaagaatatcaagagattggtttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaagatcaatcactttaa |
14332503 |
T |
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| Q |
215 |
ttgtaagttatcaagattaatcactctaaattgtgcttatataatatgtttataccgtttaacttttatactccatagtcaaaattaatcttgtaggtgc |
314 |
Q |
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| T |
14332502 |
ttgtaagttatcaagattaatcactctaaattgtgcttatataatatgtttataccgtttaacttttataatccatagtcaaaattaatcttgtaggtgc |
14332403 |
T |
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| Q |
315 |
cattatagtttataccatcactaatg |
340 |
Q |
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| T |
14332402 |
cattatagtttataccatcactaatg |
14332377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 14425712 - 14425387
Alignment:
| Q |
15 |
tactaggaaatggattaatcatgctaaaagtttgtgctcccaaaaggatatcataaattttggattggacaatctagatgccgagttaagtatgttgcgg |
114 |
Q |
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| T |
14425712 |
tactaggaaatggcttaatcatgctaaaagtttgtgctcccaaaaggatatcataaattttggattggacaatctagatgctgagttaagtatgttgcgg |
14425613 |
T |
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| Q |
115 |
gcgttgttatcagaagaatatcaagagattggtttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaagatcaatcactttaa |
214 |
Q |
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| T |
14425612 |
gcgttgttatcagaagaatatcaagagattggtttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaagatcaatcactttaa |
14425513 |
T |
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| Q |
215 |
ttgtaagttatcaagattaatcactctaaattgtgcttatataatatgtttataccgtttaacttttatactccatagtcaaaattaatcttgtaggtgc |
314 |
Q |
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| T |
14425512 |
ttgtaagttatcaagattaatcactctaaattgtgcttatataatatgtttataccgtttaacttttataatccatagtcaaaattaatcttgtaggtgc |
14425413 |
T |
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| Q |
315 |
cattatagtttataccatcactaatg |
340 |
Q |
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| T |
14425412 |
cattatagtttataccatcactaatg |
14425387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 44103482 - 44103388
Alignment:
| Q |
127 |
gaagaatatcaagagattggtttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaagatcaatcactttaattgtaag |
221 |
Q |
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|||| ||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| || ||||||||||| |||||||||| |
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| T |
44103482 |
gaaggatatcaagagattggtttttgccacaatgacctacaatatggcaacattatgatggatgaagagactagatcaatcaccctaattgtaag |
44103388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 15546070 - 15546019
Alignment:
| Q |
148 |
ttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaa |
199 |
Q |
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||||| ||||||||| |||||||||||||||||||| | ||||||| ||||| |
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| T |
15546070 |
ttttgccacaatgatttacaatatggtaacatcatgcttgatgaagtaacaa |
15546019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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