View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11182_low_1 (Length: 603)
Name: NF11182_low_1
Description: NF11182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11182_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 159 - 585
Target Start/End: Original strand, 1240090 - 1240516
Alignment:
| Q |
159 |
caattttcatcaacgaaaaatagagcatagaaaaacaaacatgaacatagggcataggaaagcaaattttggtgtccaacaccgtatacgtatatggtat |
258 |
Q |
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| T |
1240090 |
caattttcatcaacgaaaaatagagcatagaaaaacaaacatgaacatagggcataggaaagcaaattttggtgtccaacaccgtatacgtatatggtat |
1240189 |
T |
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| Q |
259 |
agatacaannnnnnnnnnnnnnnnnnnnnnncttggtctccaagtcacatccatcgttataaatgtattattatattgtgtcaaattttagatgtttaga |
358 |
Q |
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| T |
1240190 |
agatacaattttgttttttaattagttttttcttggtctccaagtcacatccatcgttataaatgtattattatattgtgtcaaattttagatgtttaga |
1240289 |
T |
|
| Q |
359 |
taacatcactcattgtgaaaatcactctaaacaaatacagttcagatcactctaaacatatggattcactagcagcataatcaccagcatgagaagcttg |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1240290 |
taacatcactcattgtgaaaatcactctaaacaaatacagttcagatcactctaaacatatggattcactagcagcataatcaccagcatgagaagcttg |
1240389 |
T |
|
| Q |
459 |
tcattgcaattattacttccatttcttaattcaatcactaacaaattaaaaacacacacaacatttttcactcgaaaatcaatctagtaacaaaaagctt |
558 |
Q |
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| T |
1240390 |
tcattgcaattattacttccatttcttaattcaatcactaacaaattaaaaacacacgcaacatttttcactcgaaaatcaatctagtaacaaaaagctt |
1240489 |
T |
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| Q |
559 |
ttaaaattaacatggcaatgttgtaac |
585 |
Q |
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| T |
1240490 |
ttaaaattaacatggcaatgttgtaac |
1240516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 1239947 - 1240004
Alignment:
| Q |
18 |
aaaatggttgtgtaccctatacataaacaataactaatgactctcataccatagttct |
75 |
Q |
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| T |
1239947 |
aaaatggttgtgtaccctatacataaacaataactaatgactctcataccatagttct |
1240004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 294 - 369
Target Start/End: Original strand, 10175205 - 10175280
Alignment:
| Q |
294 |
gtctccaagtcacatccatcgttataaatgtattattatattgtgtcaaattttagatgtttagataacatcactc |
369 |
Q |
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| T |
10175205 |
gtctccaagtcacatccattgttataaatgtatttttatacggtgtcaaattttagatattcagataacatcactc |
10175280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 10175126 - 10175175
Alignment:
| Q |
217 |
aaagcaaattttggtgtccaacaccgtatacgtatatggtatagatacaa |
266 |
Q |
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| T |
10175126 |
aaagcaatttttggtgtccgacaccatatacatatatggtatagatacaa |
10175175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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