View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11183_high_14 (Length: 459)
Name: NF11183_high_14
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_high_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 26359532 - 26359129
Alignment:
| Q |
19 |
gagctggccccataccatttaaagaaaatgtttgataaaatattggctcttttttcaattattt--ttgccttcaatctacatcagattagcactaaccc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||| ||| | | | |||||||||||||||||||||||||||||||| |
|
|
| T |
26359532 |
gagctggccccataccatttaaagaaaatgtttggtaaaatatt-----tttgcccaaatcatagctggccttcaatctacatcagattagcactaaccc |
26359438 |
T |
|
| Q |
117 |
atatactacaagacaacctcaaaacacatctaaaataacaaaattaacaaactaccaaatccaaacaagatacttcaatcactacatgctccttcgaccn |
216 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26359437 |
ata--ctacaagacaacctcaaaatacatctaaaataacaaatttaacaaactaccaaatccaaacaagatacttcaatcactacatgcttcttcgacca |
26359340 |
T |
|
| Q |
217 |
nnnnnnnnnnnnnnntcagtgcttattgcattcttggtagaaccaactttgcttaactccaaccaaaaccctat-ccccttataatattc-aaataatga |
314 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
26359339 |
aaaaataaataaaaatcagtgcttattgcattgttggtagaaccaacgttgcttaactccaaccaaaaccctatcccccttataatattcaaaaaaatga |
26359240 |
T |
|
| Q |
315 |
tcgtctatgtttggtatcacggtgacatattataattttagaaaaactacaaagtatagttttaagaatcgtcgtgattctaaatc-tgacatatctacc |
413 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||| ||||| | ||||||| |||| ||||||||||||||||||||||| | |||| | ||||||||||| |
|
|
| T |
26359239 |
tcgtct-tgtttggtatcgcggtgacacattatgattttgcagaaactacgaagtgtagttttaagaatcgtcgtgattttgaatcttaacatatctacc |
26359141 |
T |
|
| Q |
414 |
atgataccaaac |
425 |
Q |
| |
|
||||||||||| |
|
|
| T |
26359140 |
gtgataccaaac |
26359129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University