View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_high_20 (Length: 348)
Name: NF11183_high_20
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 38867275 - 38866943
Alignment:
| Q |
1 |
aaacctattccctgaaatcaacaaaattgaaagattacttgctcctgaaattgcatttgaaataggcccagaaagtgaattttcaacaagctcaagtaga |
100 |
Q |
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| T |
38867275 |
aaacctattccctgaaatcaacaaaattgaaagattacttgctcctgaaattgcatttgaaataggcccagaaagtgaattttcaacaagctcaagtaga |
38867176 |
T |
|
| Q |
101 |
tacacatgaggcaaaccccaaaaaccagaaggaacaacaccagaaagattattgttgccaagcctaactcttgttaagctcaaacagtttccaagacccg |
200 |
Q |
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| T |
38867175 |
tacacatgaggcaaaccccaaaaaccagaaggaacaacaccagaaagattattgttgccaagcctaactcttgttaagctcaaacagtttccaagacccg |
38867076 |
T |
|
| Q |
201 |
ctggaatttccccggaaaacaagttatgaatcaacaacaactcctctaaccttccctgccgacacaaacctgccggaatctcaccggaaaaatgattaaa |
300 |
Q |
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| T |
38867075 |
ctggaatttccccggaaaacaagttatgaatcaacaacaactcctctaaccttccctgccgacacaaacctgccggaatctcaccggaaaaatgattaaa |
38866976 |
T |
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| Q |
301 |
ggaaacatcaatcaactgcaaccttgagttact |
333 |
Q |
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||||||||||||||||||| |||||||||||| |
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| T |
38866975 |
cgaaacatcaatcaactgcagccttgagttact |
38866943 |
T |
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