View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_high_22 (Length: 337)
Name: NF11183_high_22
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 33415631 - 33415888
Alignment:
| Q |
19 |
gttttcaatgaaaaaattataatcatttatgggatgattcccatattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaatg |
118 |
Q |
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| T |
33415631 |
gttttcaatgaaaaaattataatcatttatgggatgattcccatattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaatg |
33415730 |
T |
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| Q |
119 |
aagtatttgtatcaaatacacgaatttgagacatattgaggtttttctttattctctgttgtaagtgaaatttgtgac-ttatgatacataaacacaata |
217 |
Q |
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| T |
33415731 |
aagtatttgtatcaaat--acgaatttgagacatattgaggtttttctttattctctgttgtaagtgaaatttgtgactttatgatagataaacacaata |
33415828 |
T |
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| Q |
218 |
atataatggtatttgtgtatttgagttttgctgttgtaagcaaaccacattttcttaaaa |
277 |
Q |
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| T |
33415829 |
atataatggtatttgtgtatttgagttttgctgttgtaagaaagccacattttcttaaaa |
33415888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 33410270 - 33410386
Alignment:
| Q |
81 |
ttatagtcacctactaagcatgagtacttg-----aaaaaatgaagtatttgtatcaaatacacgaatttgagacatattgaggtttttctttattctct |
175 |
Q |
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| T |
33410270 |
ttatagtcacctactaagcatgagtacttggaaaaaaaaaacgaagcatttgtatcaaatac--gaatttgagacatattgaggtttttcttcattatcc |
33410367 |
T |
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| Q |
176 |
gttgtaagtgaaatttgtg |
194 |
Q |
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| T |
33410368 |
attgtaagtgaaatgtgtg |
33410386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 33400006 - 33400061
Alignment:
| Q |
61 |
atattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaa |
116 |
Q |
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| T |
33400006 |
atattatggtttttaaataattacagtgacctactaagcatgagtacttggaaaaa |
33400061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 33397852 - 33397901
Alignment:
| Q |
29 |
aaaaaattataatcatttatgggatgattcccatattgtggtttttagat |
78 |
Q |
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|||||| |||||| ||||||||| ||||| ||||||||||||||||||| |
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| T |
33397852 |
aaaaaagtataataatttatggggtgatttgcatattgtggtttttagat |
33397901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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