View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_high_24 (Length: 332)
Name: NF11183_high_24
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 30343124 - 30343434
Alignment:
| Q |
1 |
aaggaagagagaggttaatgatgttttgtgtgttgttgaagcatttgtagaagaagagttttcggaggtaggagaaagaggtgaagagagttgggttgag |
100 |
Q |
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| T |
30343124 |
aaggaagagagaggttaatgatgttttgtgtgttgttgaagcatttgtagaagaagagttttcggaggtaggagaaagaggtgaagagagttgggttgag |
30343223 |
T |
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| Q |
101 |
agtagcattagaggaacaaggtggggttggtgtttcatcggaaacgtaaccgaagttgagttcaacaatgtgtggttggttttgatcatagtcgcaaaca |
200 |
Q |
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| T |
30343224 |
agtggcgttagaggaacaaggtggggttggtgtttcatcggaaacgtaaccgaagttgagttcaacaatgtgtggttggttttgatcatagtcgcaaaca |
30343323 |
T |
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| Q |
201 |
acgccgtgtggggcggagagacagagatcatcggggaaaagtgtttgccatggaatggttgggttgagggagttgagaacattgtagagtgctttttgtt |
300 |
Q |
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| T |
30343324 |
acgccgtgtggagcggagagacagagatcatcggggaaaagtgtttgccatggaatggttgggttgagggagttgagaacattgtagagtgctttttgtt |
30343423 |
T |
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| Q |
301 |
ctgttgggtca |
311 |
Q |
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| T |
30343424 |
ctgttgggtca |
30343434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 30325540 - 30325491
Alignment:
| Q |
260 |
tgggttgagggagttgagaacattgtagagtgctttttgttctgttgggt |
309 |
Q |
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| T |
30325540 |
tgggttgatggagttgagaacattgtagagtgctttttgttcggttgggt |
30325491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 30337177 - 30337128
Alignment:
| Q |
260 |
tgggttgagggagttgagaacattgtagagtgctttttgttctgttgggt |
309 |
Q |
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| T |
30337177 |
tgggttgatggagttgagaacattgtagagtgctttttgttcagttgggt |
30337128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 30333045 - 30332972
Alignment:
| Q |
27 |
tgtgtgttgttgaagcatttgtagaagaagagttttcggaggtaggagaaagaggtgaagagagttgggttgag |
100 |
Q |
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| T |
30333045 |
tgtgtgttgttgaagcatttgtggaatgtgagtttgcggaggtagttgaaaggggttaagagtattgggttgag |
30332972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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