View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11183_high_25 (Length: 326)

Name: NF11183_high_25
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11183_high_25
NF11183_high_25
[»] chr7 (7 HSPs)
chr7 (195-307)||(29617802-29617914)
chr7 (140-194)||(223552-223607)
chr7 (144-179)||(26253085-26253120)
chr7 (130-194)||(9939426-9939491)
chr7 (130-194)||(10027618-10027683)
chr7 (130-194)||(29241530-29241595)
chr7 (130-193)||(36698744-36698808)
[»] chr6 (4 HSPs)
chr6 (131-194)||(24608306-24608371)
chr6 (130-194)||(30124176-30124240)
chr6 (130-179)||(11574463-11574512)
chr6 (147-197)||(30832685-30832735)
[»] chr4 (11 HSPs)
chr4 (139-196)||(3850593-3850651)
chr4 (144-197)||(16924662-16924715)
chr4 (134-194)||(31984820-31984881)
chr4 (130-179)||(979385-979434)
chr4 (147-189)||(40089330-40089372)
chr4 (147-194)||(38352507-38352554)
chr4 (81-111)||(3850680-3850710)
chr4 (130-195)||(25887285-25887351)
chr4 (130-194)||(29690934-29690999)
chr4 (130-179)||(45996891-45996940)
chr4 (139-179)||(7443710-7443750)
[»] chr3 (3 HSPs)
chr3 (130-194)||(11467757-11467822)
chr3 (130-194)||(25373625-25373690)
chr3 (140-179)||(40740227-40740266)
[»] chr8 (8 HSPs)
chr8 (130-196)||(45294580-45294647)
chr8 (130-191)||(4322486-4322548)
chr8 (130-179)||(1176226-1176275)
chr8 (130-194)||(33978655-33978720)
chr8 (130-179)||(7587911-7587960)
chr8 (130-179)||(9491942-9491991)
chr8 (130-194)||(15270126-15270191)
chr8 (130-194)||(33963498-33963563)
[»] chr5 (6 HSPs)
chr5 (130-194)||(31068109-31068174)
chr5 (130-179)||(8433576-8433625)
chr5 (131-194)||(35192177-35192240)
chr5 (133-179)||(41842825-41842871)
chr5 (147-177)||(15523691-15523721)
chr5 (147-177)||(39544277-39544307)
[»] chr2 (6 HSPs)
chr2 (10-111)||(52828-52929)
chr2 (149-195)||(5558751-5558797)
chr2 (134-179)||(52955-53000)
chr2 (130-179)||(7763664-7763713)
chr2 (136-179)||(35321186-35321229)
chr2 (139-179)||(34620195-34620235)
[»] chr1 (4 HSPs)
chr1 (130-179)||(12037605-12037653)
chr1 (130-180)||(24184492-24184542)
chr1 (10-111)||(12037669-12037770)
chr1 (130-179)||(52128451-52128500)
[»] scaffold0369 (1 HSPs)
scaffold0369 (130-194)||(14373-14438)
[»] scaffold0027 (1 HSPs)
scaffold0027 (147-194)||(4149-4197)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 195 - 307
Target Start/End: Complemental strand, 29617914 - 29617802
Alignment:
Q  195 ctattatgaaagaagaaaaggaatcaatgcatgacaatggcgttttaggatctagttgagttgcatagaggttcaaaatgagtttgtatggaaatagtta 294  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29617914 ctattatgaaagaagaaatggaatcaatgcatgacaatggcgttttaggatctagttgagttgcatagaggttcaaaatgagtttgtatgaaaatagtta 29617815  T
Q  295 tttacgagttgtg 307  Q
    |||||||||||||    
T  29617814 tttacgagttgtg 29617802  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 223607 - 223552
Alignment:
Q  140 aaattttggaggcccagctcagtagagctgtttgca-cccctcatggccggccctg 194  Q
    |||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||    
T  223607 aaattttggacgcccagctcagtagagctgtttgcaccccctcattgccggccctg 223552  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 26253120 - 26253085
Alignment:
Q  144 tttggaggcccagctcagtagagctgtttgcacccc 179  Q
    |||||||||||||||||| |||||||||||||||||    
T  26253120 tttggaggcccagctcagaagagctgtttgcacccc 26253085  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 9939426 - 9939491
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacc-cctcatggccggccctg 194  Q
    ||||||||  |||||  ||||||||||||| ||||||||||||||||| || || |||||||||||    
T  9939426 ttgggccccaaaattggggaggcccagctctgtagagctgtttgcacctccccagggccggccctg 9939491  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 10027683 - 10027618
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacc-cctcatggccggccctg 194  Q
    ||||||||  |||||  ||||||||||||| ||||||||||||||||| || || |||||||||||    
T  10027683 ttgggccccaaaattggggaggcccagctctgtagagctgtttgcacctccccagggccggccctg 10027618  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 29241530 - 29241595
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacc-cctcatggccggccctg 194  Q
    ||||||||  |||||  ||||||||||||| ||||||||||||||||| || || |||||||||||    
T  29241530 ttgggccccaaaattggggaggcccagctctgtagagctgtttgcacctccccaaggccggccctg 29241595  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 36698744 - 36698808
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacc-cctcatggccggccct 193  Q
    ||||||||  |||||  ||||||||||||| ||||||||||||||||| || || ||||||||||    
T  36698744 ttgggccccaaaattggggaggcccagctctgtagagctgtttgcacctccccaaggccggccct 36698808  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 24608306 - 24608371
Alignment:
Q  131 tgggccctcaaattttggaggcccagctcagtagagctgtttgca--cccctcatggccggccctg 194  Q
    |||||||  ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  24608306 tgggccccaaaattttggaggcccagctcagtagagctgtttgcacccccctcatggccggccctg 24608371  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 30124176 - 30124240
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacccctcatggccggccctg 194  Q
    |||||||| |||| |||||||||||| |||| ||||||||||||||||||| | |||||||||||    
T  30124176 ttgggcccccaaaatttggaggcccaactcattagagctgtttgcacccctaaaggccggccctg 30124240  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 11574512 - 11574463
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    |||||| | |||| ||| ||||||||||||||||||||||||||||||||    
T  11574512 ttgggcacccaaaattttgaggcccagctcagtagagctgtttgcacccc 11574463  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 30832685 - 30832735
Alignment:
Q  147 ggaggcccagctcagtagagctgtttgcacccctcatggccggccctgcta 197  Q
    |||||||||||||| | ||||||||||||||||||| || || ||||||||    
T  30832685 ggaggcccagctcatttgagctgtttgcacccctcaaggacgcccctgcta 30832735  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 3850651 - 3850593
Alignment:
Q  139 caaattttggaggcccagctcagtagagctgtttgca-cccctcatggccggccctgct 196  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  3850651 caaattttggaggcccagctcagtatagctgtttgcaccccctcatggccggccctgct 3850593  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 16924662 - 16924715
Alignment:
Q  144 tttggaggcccagctcagtagagctgtttgcacccctcatggccggccctgcta 197  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  16924662 tttgaaggcccagctcagtagagctgtttgtacccctcaaggccggccctgcta 16924715  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 31984820 - 31984881
Alignment:
Q  134 gccctcaaattttggaggcccagctcagtagagctgtttgca-cccctcatggccggccctg 194  Q
    |||| |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||    
T  31984820 gcccccaaattttggaggcccggctcagtagagctgtttgcaccccctcaaggccggccctg 31984881  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 979434 - 979385
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||||    
T  979434 ttgggcctccaaatttaggaggcccagctcagtagagctgtttgcacccc 979385  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 40089372 - 40089330
Alignment:
Q  147 ggaggcccagctcagtagagctgtttgcacccctcatggccgg 189  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  40089372 ggaggcccagctctgttgagctgtttgcacccctcatggccgg 40089330  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 38352507 - 38352554
Alignment:
Q  147 ggaggcccagctcagtagagctgtttgcacccctcatggccggccctg 194  Q
    ||||||||||||| || ||||||||||||||||||| |||||| ||||    
T  38352507 ggaggcccagctctgttgagctgtttgcacccctcagggccgggcctg 38352554  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 111
Target Start/End: Complemental strand, 3850710 - 3850680
Alignment:
Q  81 tatatattatttatttccatgcagcatatat 111  Q
    |||||||||||||||||||||||||||||||    
T  3850710 tatatattatttatttccatgcagcatatat 3850680  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 25887285 - 25887351
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacc-cctcatggccggccctgc 195  Q
    ||||||||  |||||  ||||||||||||| ||||||||||||||||| || || ||||||||||||    
T  25887285 ttgggccccaaaattggggaggcccagctctgtagagctgtttgcacctccccagggccggccctgc 25887351  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 29690934 - 29690999
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacc-cctcatggccggccctg 194  Q
    ||||||||  |||||  ||||||||||||| ||||||||||||||||| || || |||||||||||    
T  29690934 ttgggccccaaaattggggaggcccagctctgtagagctgtttgcacctccccagggccggccctg 29690999  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 45996891 - 45996940
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    |||||||  ||||||| |||| |||||||| |||||||||||||||||||    
T  45996891 ttgggcctccaaatttgggagacccagctcggtagagctgtttgcacccc 45996940  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 7443750 - 7443710
Alignment:
Q  139 caaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  7443750 caaattttggaggcccggttcggtagagctgtttgcacccc 7443710  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 11467822 - 11467757
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgca-cccctcatggccggccctg 194  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||    
T  11467822 ttgggccctaaaattttgaaggcccagctcagtagagctgtttgcaccccctcatggccagccctg 11467757  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 25373625 - 25373690
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgca-cccctcatggccggccctg 194  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  25373625 ttgggccccaaaattttggaggcccagctcagtagagctgtttgcaccccctcatggtcggccctg 25373690  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 40740266 - 40740227
Alignment:
Q  140 aaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    |||||| ||||||||| |||||||||||||||||||||||    
T  40740266 aaatttaggaggcccaactcagtagagctgtttgcacccc 40740227  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 45294580 - 45294647
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgca-cccctcatggccggccctgct 196  Q
    |||||||| |||||||||||||||||||||| |||||||||||||| ||||||| || ||||||||||    
T  45294580 ttgggcccccaaattttggaggcccagctcattagagctgtttgcaccccctcaaggacggccctgct 45294647  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 4322486 - 4322548
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgca-cccctcatggccggcc 191  Q
    ||||||||  |||||| |||||||||||||| |||||||||||||| ||||||||||||||||    
T  4322486 ttgggccccaaaatttaggaggcccagctcaatagagctgtttgcaccccctcatggccggcc 4322548  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 1176226 - 1176275
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  1176226 ttgggcccccaaattttggaggtctagctcagtagagctgtttgcacccc 1176275  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 33978655 - 33978720
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgca-cccctcatggccggccctg 194  Q
    |||||||  |||| ||||||||| |||||||||||||||||||||| ||||||| |||||||||||    
T  33978655 ttgggcctccaaaatttggaggctcagctcagtagagctgtttgcaccccctcaaggccggccctg 33978720  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 7587960 - 7587911
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    |||||||| || ||||||||||  ||||| ||||||||||||||||||||    
T  7587960 ttgggcccccatattttggaggttcagcttagtagagctgtttgcacccc 7587911  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 9491942 - 9491991
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    ||||||||  ||| |||| ||| |||||||||||||||||||||||||||    
T  9491942 ttgggcccctaaaatttgaaggtccagctcagtagagctgtttgcacccc 9491991  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 15270126 - 15270191
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacc-cctcatggccggccctg 194  Q
    ||||||||  |||||  ||||||||||||| ||||||||||||||||| || || |||||||||||    
T  15270126 ttgggccccaaaattggggaggcccagctctgtagagctgtttgcacctccccagggccggccctg 15270191  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 33963498 - 33963563
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgca-cccctcatggccggccctg 194  Q
    |||||||  |||| ||||||||  |||| ||||||||||||||||| ||||||| |||||||||||    
T  33963498 ttgggcctccaaaatttggaggttcagcgcagtagagctgtttgcaccccctcaaggccggccctg 33963563  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 31068109 - 31068174
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgca-cccctcatggccggccctg 194  Q
    ||||||||  ||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||    
T  31068109 ttgggccccaaaattttggaggcccagctcagtagagctgtctgcacccccttatggccggccctg 31068174  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 8433576 - 8433625
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    |||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  8433576 ttgggcccccaaaatttggaggcccagctcattagagctgtttgcacccc 8433625  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 35192240 - 35192177
Alignment:
Q  131 tgggccctcaaattttggaggcccagctcagtagagctgtttgcacccctcatggccggccctg 194  Q
    |||||||  ||| |||||||| ||||||||||||||||||||||||||| || | |||||||||    
T  35192240 tgggcccctaaaatttggaggtccagctcagtagagctgtttgcaccccacaagaccggccctg 35192177  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 41842871 - 41842825
Alignment:
Q  133 ggccctcaaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    ||||| ||||||||| ||||||||||||||||||||||||| |||||    
T  41842871 ggcccccaaattttgaaggcccagctcagtagagctgtttgtacccc 41842825  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 177
Target Start/End: Complemental strand, 15523721 - 15523691
Alignment:
Q  147 ggaggcccagctcagtagagctgtttgcacc 177  Q
    |||||||||||||||||||||||||||||||    
T  15523721 ggaggcccagctcagtagagctgtttgcacc 15523691  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 177
Target Start/End: Complemental strand, 39544307 - 39544277
Alignment:
Q  147 ggaggcccagctcagtagagctgtttgcacc 177  Q
    |||||||||||||||||||||||||||||||    
T  39544307 ggaggcccagctcagtagagctgtttgcacc 39544277  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 52828 - 52929
Alignment:
Q  10 ctatgcaatgtaaattcccattcttaccgctcttccatttaggaataaatgataaccttccgcgctgcatgtatatattatttatttccatgcagcatat 109  Q
    |||||||||| | ||||||||||||||| |||  ||||||||  |||  ||| ||  |||| |||  |||||||||||||||||||||||||||||||||    
T  52828 ctatgcaatgcagattcccattcttaccactcaaccatttagacatacttgaaaattttccacgccacatgtatatattatttatttccatgcagcatat 52927  T
Q  110 at 111  Q
    ||    
T  52928 at 52929  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 5558751 - 5558797
Alignment:
Q  149 aggcccagctcagtagagctgtttgcacccctcatggccggccctgc 195  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  5558751 aggcccagctcaatagagctgtttgcacccctcatgcccggccctgc 5558797  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 52955 - 53000
Alignment:
Q  134 gccctcaaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||    
T  52955 gcccccaaattttggaggcccagctcagtagagctgcttgcacccc 53000  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 7763713 - 7763664
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    |||||| | ||||||||||| ||||| |||||||||||||||||||||||    
T  7763713 ttgggctcccaaattttggaagcccaactcagtagagctgtttgcacccc 7763664  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 35321186 - 35321229
Alignment:
Q  136 cctcaaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    |||||||  |||||||||||| ||||||||||||||||||||||    
T  35321186 cctcaaaaattggaggcccagttcagtagagctgtttgcacccc 35321229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 34620195 - 34620235
Alignment:
Q  139 caaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    |||| |||||||||| |||||||||||| ||||||||||||    
T  34620195 caaaatttggaggcctagctcagtagagttgtttgcacccc 34620235  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 12037653 - 12037605
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12037653 ttgggccct-aaattttggaggcccagctcagtagagctgtttgcacccc 12037605  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 24184492 - 24184542
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacccct 180  Q
    |||||||| |||| ||||||||||||||||| || ||||||||||||||||    
T  24184492 ttgggcccccaaaatttggaggcccagctcaatatagctgtttgcacccct 24184542  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 12037770 - 12037669
Alignment:
Q  10 ctatgcaatgtaaattcccattcttaccgctcttccatttaggaataaatgataaccttccgcgctgcatgtatatattatttatttccatgcagcatat 109  Q
    |||||||||  || ||||||||||||||||||  ||| ||||  |||  ||| ||| || |||||  || ||||||| ||||||||||| ||||||||||    
T  12037770 ctatgcaatacaatttcccattcttaccgctcggccagttagacatacttgaaaacttttcgcgccacaagtatatactatttatttccgtgcagcatat 12037671  T
Q  110 at 111  Q
    ||    
T  12037670 at 12037669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 52128451 - 52128500
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacccc 179  Q
    |||||||  ||||||| ||||||||||| || ||||||||||||||||||    
T  52128451 ttgggcctccaaatttaggaggcccagcccaatagagctgtttgcacccc 52128500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 14438 - 14373
Alignment:
Q  130 ttgggccctcaaattttggaggcccagctcagtagagctgtttgcacc-cctcatggccggccctg 194  Q
    ||||||||  |||||  ||||||||||||| ||||||||||||||||| || || |||||||||||    
T  14438 ttgggccccaaaattggggaggcccagctctgtagagctgtttgcacctccccagggccggccctg 14373  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 4197 - 4149
Alignment:
Q  147 ggaggcccagctcagtagagctgtttgcaccc-ctcatggccggccctg 194  Q
    ||||||||||||| || ||||||||||||||| |||| |||||||||||    
T  4197 ggaggcccagctctgttgagctgtttgcaccctctcagggccggccctg 4149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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