View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_high_45 (Length: 240)
Name: NF11183_high_45
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38977699 - 38977922
Alignment:
| Q |
1 |
catcatcgaaaacataaatccttattgagcattttaacaaacaccttgtaagtgcaaataataagg-aatgttaatctcatcacacaatttcatgtatca |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38977699 |
catcatcgaaaacataaatccttattgagcattttaacaaacaccttgtaagtgcaaataataagggaatgttaatctcatcacacaatttcatgtatca |
38977798 |
T |
|
| Q |
100 |
acattttcgcaattttaacattcaagtgtgattaacagagtgagaattagataatcacgaaagcgaacaaactcacgaagtgaacgaactcttgaatcac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38977799 |
acattttcgcaattttaacattcaagtgtgattaacagagtgagaattggataatcacgaaagcgaacaaactcacgaagtgaacgaactcttgaatcac |
38977898 |
T |
|
| Q |
200 |
gggaatcccaaatcaatttggaat |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
38977899 |
gggaatcccaaatcaatttggaat |
38977922 |
T |
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