View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_high_48 (Length: 239)
Name: NF11183_high_48
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8750167 - 8750386
Alignment:
| Q |
1 |
cctagcttacaaggtgcatggttgtgttaggcgcaaccacaaattctaatcaaagtatatttgttttttcttaggatccgtattccactaaaagtaaaga |
100 |
Q |
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| T |
8750167 |
cctagcttacaaggtgcatggttgtgttaggcgcaaccacaaattctaatcaaaatatatttgttttttcttaggatctgtattcaactaaaagtaaaga |
8750266 |
T |
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| Q |
101 |
aaaataaatataaattaagttgtatgttaaaagtttcattttggatgagatatggaatgtttataagtagtaacaatcctcaccttacagacacgttttg |
200 |
Q |
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| T |
8750267 |
aaaataaatataaattgagctgtatgttaaaagtttcattttggatgagatatggaatgtttataagtagtaacaatcctcaccttacagacacgttttg |
8750366 |
T |
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| Q |
201 |
tgagattgtgtatgtccaac |
220 |
Q |
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| T |
8750367 |
tgagattgtgtatgtccaac |
8750386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 8750581 - 8750645
Alignment:
| Q |
7 |
ttacaaggtgcatggttgtgttaggcgcaaccacaaattctaatcaaagtatatttgttttttct |
71 |
Q |
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||||||| ||||||||||||||| || ||||||||||||||||| ||| |||||||| ||||||| |
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| T |
8750581 |
ttacaagttgcatggttgtgttacgcccaaccacaaattctaataaaaatatatttgctttttct |
8750645 |
T |
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