View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_high_5 (Length: 594)
Name: NF11183_high_5
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 12 - 576
Target Start/End: Original strand, 5800270 - 5800835
Alignment:
| Q |
12 |
agatgaagagggagaatcatagcaggacgagaagcgttacgagtattagggaagaataagaggttgttgggattgatagagagagtgaagagtggaaggt |
111 |
Q |
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| T |
5800270 |
agatgaagagggagaatcatagcaggacgagaagcgttacgagtattagggaagaataagaggttgttgggattgatagagagagtgaagagtggaaggt |
5800369 |
T |
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| Q |
112 |
gtagaattagaaagaagattgagatgaattgagtcatcgccatgattgaatttgtgaactgcgcacgcaatggtggtgatttaagaagtgataaggaaaa |
211 |
Q |
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| T |
5800370 |
gtagaattagaaagaagattgagatgaattgagtcatcgccatgattgaatttgtgaactgcgcacgcaatggtggtgatttaagaagtgataaggaaaa |
5800469 |
T |
|
| Q |
212 |
tcacagagttaggctttgagtatcaattacgtcaacaacgaaggatggagggagggaagtcaagctatcatcatcaatcgtgtgtgttgtttcaatcaac |
311 |
Q |
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| T |
5800470 |
tcacagagttaggctttgagtatcaattacgtcaacaacgaaggatggagggagggaagtcaagctatcatcatcaatcgtgtgtgttgtttcaatcaac |
5800569 |
T |
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| Q |
312 |
gttcgctttaactctcatttacgttccttccctttaactcattctattctattctacgttcgctttcttttcttaaacattaaattaaggattgatatgt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5800570 |
gttcgctttaactctcatttacgttccttccctttaactc-----attctattctacgttcgctttcttttcttaaacattaaattaaggattgatatgt |
5800664 |
T |
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| Q |
412 |
aaaaggc------aatgagacaaacnnnnnnnngtttttaatttatgattttatatatgaagcttttttacaatatcagattcaaagtagctttcatttt |
505 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5800665 |
aaaaggcaatgagaatgagacaaacaaaaaaaagtttttaatttatgattttatatatgaagcttttttacaatatcagattcaaagtagctttcatttt |
5800764 |
T |
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| Q |
506 |
tcttgttaggtaagacatattttttagcttataatttatgtttcatttgactcaaaaatcatgttagtaac |
576 |
Q |
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| T |
5800765 |
tcttgttaggtaagacatattttttagcttataatttatgtttcatttgactcaaaaatcatgttagtaac |
5800835 |
T |
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