View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11183_high_56 (Length: 215)
Name: NF11183_high_56
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_high_56 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 10599089 - 10598943
Alignment:
| Q |
54 |
tattgactacttactgatcacgatcacttt-cttttccttaaccgatctctaaattat--ttatagcaataaaactaacattcatttattcataccacaa |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10599089 |
tattgactacttactgatcacgatcactttactattccttaaccgttctctaaattatatttatagcaataaaactaacattcatttattcataccacaa |
10598990 |
T |
|
| Q |
151 |
atattacaattatacatcattatcaatacaacaagactcataccatg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10598989 |
atattacaattatacatcattatcaatacaacaagactcataccatg |
10598943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 10599154 - 10599109
Alignment:
| Q |
9 |
agaagcagagatgcaaaagacctaatcatttgcaattcctatttgt |
54 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10599154 |
agaagaagagatgcaaaagacctaatcatttgcaattcctatttgt |
10599109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University