View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_high_58 (Length: 209)
Name: NF11183_high_58
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_high_58 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 39373728 - 39373905
Alignment:
| Q |
19 |
atcccatccaaacccactagtgttcatcatgtcaacaacttcattaagctttgttgaccaccttttcatcttgttaacaatttgcttggcattgataagt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39373728 |
atcccatccaaacccactagtgttcatcatgtcaacaacttcattaagctttgttgaccaccttttcatcttgttaacaatttgcttggcattgataagt |
39373827 |
T |
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| Q |
119 |
attcctcgaattttatttttcattctcttgcaaatttcctcatgagttccagtcttgaatgttccattctctcctttg |
196 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39373828 |
attcctggaattttatttttcattctcttgcaaacttcctcatgagttccagtcttgaatgttccattctctcctttg |
39373905 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 17051408 - 17051231
Alignment:
| Q |
19 |
atcccatccaaacccactagtgttcatcatgtcaacaacttcattaagctttgttgaccaccttttcatcttgttaacaatttgcttggcattgataagt |
118 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17051408 |
atcccaaccaaacccaccagtgttcatcatgtcaacaacttcattaagctttgttgaccaccttttcatcttgttaacaatttgcttggcattgataagt |
17051309 |
T |
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| Q |
119 |
attcctcgaattttatttttcattctcttgcaaatttcctcatgagttccagtcttgaatgttccattctctcctttg |
196 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17051308 |
attcctggaattttatttttcattctcttgcaaacttcctcatgagttacagtcttgaatgttccattctctcctttg |
17051231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 48534581 - 48534404
Alignment:
| Q |
19 |
atcccatccaaacccactagtgttcatcatgtcaacaacttcattaagctttgttgaccaccttttcatcttgttaacaatttgcttggcattgataagt |
118 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48534581 |
atcccaaccaagcccactagtgttcatcatgtcaacaacttcattaagctttgttgaccaccttttcatcttgttaacaatttgcttggcattgataagt |
48534482 |
T |
|
| Q |
119 |
attcctcgaattttatttttcattctcttgcaaatttcctcatgagttccagtcttgaatgttccattctctcctttg |
196 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
48534481 |
attcctagaattttatttttcattctcttgcaaacttcctcatgagtttcagtcttgaatgttccattctgtcctttg |
48534404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 33311627 - 33311528
Alignment:
| Q |
19 |
atcccatccaaacccactagtgttcatcatgtcaacaacttcattaagctttgttgaccaccttttcatcttgttaacaatttgcttggcattgataagt |
118 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
33311627 |
atcccatccaaacccactagtattcatcatgtcaacaacttcattaagctttgttgaccactttttcatcttgttaataatttgcttggcattgataagt |
33311528 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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