View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11183_high_6 (Length: 567)

Name: NF11183_high_6
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11183_high_6
NF11183_high_6
[»] chr4 (19 HSPs)
chr4 (137-345)||(47863461-47863668)
chr4 (256-342)||(5169489-5169574)
chr4 (161-330)||(56083445-56083604)
chr4 (161-232)||(12862605-12862676)
chr4 (161-232)||(6658647-6658718)
chr4 (75-224)||(47861936-47862086)
chr4 (71-128)||(16314198-16314256)
chr4 (72-125)||(17288631-17288685)
chr4 (256-330)||(51569923-51569996)
chr4 (191-232)||(16312768-16312809)
chr4 (73-126)||(56083355-56083408)
chr4 (137-177)||(6210672-6210712)
chr4 (66-125)||(23506383-23506443)
chr4 (137-231)||(47376598-47376693)
chr4 (69-118)||(6212504-6212553)
chr4 (70-123)||(12861410-12861463)
chr4 (69-125)||(23504892-23504949)
chr4 (72-127)||(5169313-5169369)
chr4 (70-113)||(17288768-17288812)
[»] chr3 (18 HSPs)
chr3 (138-330)||(11151397-11151579)
chr3 (256-342)||(39606429-39606514)
chr3 (256-342)||(54673439-54673524)
chr3 (251-342)||(48538031-48538122)
chr3 (71-128)||(36438770-36438828)
chr3 (69-123)||(48537849-48537902)
chr3 (194-230)||(34825709-34825745)
chr3 (192-232)||(36437336-36437376)
chr3 (71-126)||(48165505-48165560)
chr3 (161-224)||(54672720-54672782)
chr3 (70-126)||(15439678-15439735)
chr3 (256-330)||(37086543-37086609)
chr3 (70-119)||(52042113-52042162)
chr3 (265-330)||(52092696-52092761)
chr3 (71-126)||(11150270-11150326)
chr3 (71-126)||(34799864-34799920)
chr3 (71-126)||(42278454-42278510)
chr3 (137-177)||(52090741-52090781)
[»] chr1 (19 HSPs)
chr1 (140-330)||(24304114-24304294)
chr1 (256-342)||(13970788-13970874)
chr1 (161-232)||(51676228-51676299)
chr1 (286-330)||(51676149-51676193)
chr1 (256-330)||(35712624-35712697)
chr1 (71-126)||(43403296-43403352)
chr1 (70-122)||(48030240-48030292)
chr1 (149-224)||(9010958-9011032)
chr1 (137-224)||(17242004-17242090)
chr1 (137-224)||(24302999-24303085)
chr1 (70-126)||(21747941-21747998)
chr1 (191-232)||(35712574-35712615)
chr1 (70-123)||(43402261-43402314)
chr1 (137-177)||(21749235-21749275)
chr1 (72-123)||(9008761-9008812)
chr1 (73-123)||(49383023-49383073)
chr1 (69-126)||(51676335-51676392)
chr1 (71-126)||(42098729-42098785)
chr1 (137-177)||(49384446-49384486)
[»] chr8 (13 HSPs)
chr8 (137-342)||(40462337-40462532)
chr8 (1-71)||(10599125-10599200)
chr8 (286-330)||(9755878-9755922)
chr8 (70-123)||(14099743-14099796)
chr8 (191-232)||(26521893-26521934)
chr8 (161-232)||(9755775-9755846)
chr8 (71-125)||(3917795-3917849)
chr8 (69-123)||(38980160-38980214)
chr8 (69-123)||(39011257-39011311)
chr8 (137-177)||(14101036-14101076)
chr8 (257-311)||(34314995-34315048)
chr8 (191-224)||(34315071-34315104)
chr8 (71-123)||(42480897-42480949)
[»] scaffold0262 (1 HSPs)
scaffold0262 (71-342)||(2759-3018)
[»] chr5 (4 HSPs)
chr5 (161-232)||(27491167-27491238)
chr5 (71-125)||(29875946-29876000)
chr5 (70-123)||(27490097-27490151)
chr5 (71-113)||(27491287-27491329)
[»] chr6 (9 HSPs)
chr6 (265-330)||(12605065-12605129)
chr6 (71-126)||(12603936-12603991)
chr6 (260-330)||(21511668-21511738)
chr6 (265-339)||(25482333-25482406)
chr6 (74-126)||(26545868-26545920)
chr6 (69-124)||(32146093-32146149)
chr6 (71-126)||(25483399-25483454)
chr6 (191-231)||(5859019-5859059)
chr6 (137-177)||(9307089-9307129)
[»] scaffold0049 (2 HSPs)
scaffold0049 (71-123)||(3925-3977)
scaffold0049 (72-125)||(386-440)
[»] chr7 (5 HSPs)
chr7 (137-224)||(5737244-5737330)
chr7 (72-126)||(19628181-19628235)
chr7 (198-232)||(47578501-47578535)
chr7 (70-126)||(12628031-12628088)
chr7 (257-330)||(23526571-23526644)
[»] chr2 (1 HSPs)
chr2 (191-224)||(29043522-29043555)
[»] scaffold0408 (1 HSPs)
scaffold0408 (70-122)||(10085-10136)
[»] scaffold0484 (1 HSPs)
scaffold0484 (70-123)||(11534-11587)
[»] scaffold0071 (1 HSPs)
scaffold0071 (70-126)||(22456-22513)
[»] scaffold0061 (1 HSPs)
scaffold0061 (162-219)||(9880-9936)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 9e-93; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 137 - 345
Target Start/End: Complemental strand, 47863668 - 47863461
Alignment:
Q  137 cttggagattctccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgtgatg 236  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47863668 cttggagattccccctcgtcattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgctaactgtgtgatg 47863569  T
Q  237 atgtggcacgctcactgatgtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctga 336  Q
    |||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  47863568 atgtggcacgctgactgatgtggcactgacacgtcataa-ttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacccctta 47863470  T
Q  337 tgataagtt 345  Q
    |||||||||    
T  47863469 tgataagtt 47863461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 5169489 - 5169574
Alignment:
Q  256 gtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctgatgataa 342  Q
    |||||||| |||||||||||||||||  | |||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||||    
T  5169489 gtggcactgacacgtcataatttttattt-ttttatttttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataa 5169574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 161 - 330
Target Start/End: Original strand, 56083445 - 56083604
Alignment:
Q  161 gaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgtgatgatgtggcacgctcactgatgtggc 260  Q
    ||||||||||||||||||||| || |  | ||||||||||||||||||| |||||||||||||| |||||||  |||||          | ||| |||||    
T  56083445 gaagattctttgattttcaactctgatgccatctgactggattaatgagttgatgtggcacgctgactgtgtagtgatg----------agtgaagtggc 56083534  T
Q  261 actaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 330  Q
    | | |||  ||||| ||| || || |||| |||||||||||||||||||||||||||||||| |||||||    
T  56083535 attgacatatcatattttatatattttttttttttaaaagtatgttaaaaatgtgaaataccaaaaatac 56083604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 12862676 - 12862605
Alignment:
Q  161 gaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgt 232  Q
    |||||||||||||||||||||||| |    |||||||||||||||||||||||||||||||||| |||||||    
T  12862676 gaagattctttgattttcaaccctgatgtcatctgactggattaatgagctgatgtggcacgctgactgtgt 12862605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 6658718 - 6658647
Alignment:
Q  161 gaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgt 232  Q
    |||||||||||||||||||||||  |    |||||||||||||||||||||||||||||||||| |||||||    
T  6658718 gaagattctttgattttcaacccggatgtcatctgactggattaatgagctgatgtggcacgctgactgtgt 6658647  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 47861936 - 47862086
Alignment:
Q  75 ttaataggcttttacctcctgtcatttgggggacttttgatttacccccctac--gnnnnnnnncttggagattctccctcgccattagaagattctttg 172  Q
    |||||||||||||||| |||| |||||||||| |||||| |||||||||||||  |        ||||||||| | |||| |||||||||||||||||||    
T  47861936 ttaataggcttttaccccctgccatttgggggtcttttggtttacccccctacgagaaaaaaaacttggagatccccccttgccattagaagattctttg 47862035  T
Q  173 attttcaaccctcagacaatctgactggattaatgagctgatgtggcacgct 224  Q
     ||| | |||  || || |||||| |||||||||| | |||| |||||||||    
T  47862036 gtttac-acctccaaaccatctgattggattaatgtggtgatttggcacgct 47862086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 16314256 - 16314198
Alignment:
Q  71 agggttaataggcttttacctcc-tgtcatttgggggacttttgatttacccccctacg 128  Q
    |||||||||||||||||||| || || |||||||||| |||||| ||||||||||||||    
T  16314256 agggttaataggcttttacccccctgccatttgggggtcttttggtttacccccctacg 16314198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 17288631 - 17288685
Alignment:
Q  72 gggttaataggcttttacctcc-tgtcatttgggggacttttgatttacccccct 125  Q
    ||||||||||||||||||| || || ||||||||||||||||| |||||||||||    
T  17288631 gggttaataggcttttacccccctgccatttgggggacttttggtttacccccct 17288685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 51569996 - 51569923
Alignment:
Q  256 gtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 330  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||| |||||   || |||||||||||| |||||    
T  51569996 gtggcactgacacgtcataatttttaaat-tttaatttttaaaagaatgtttggaaagtgaaatacccagaatac 51569923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 16312768 - 16312809
Alignment:
Q  191 atctgactggattaatgagctgatgtggcacgctaactgtgt 232  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  16312768 atctgactggattaatgagatgatgtggcacgctgactgtgt 16312809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 56083355 - 56083408
Alignment:
Q  73 ggttaataggcttttacctcctgtcatttgggggacttttgatttaccccccta 126  Q
    |||||||||||||||||| |||| |||||||||| |||||| | ||||||||||    
T  56083355 ggttaataggcttttaccccctgccatttgggggtcttttggtataccccccta 56083408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 6210672 - 6210712
Alignment:
Q  137 cttggagattctccctcgccattagaagattctttgatttt 177  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  6210672 cttggagattcccccttgccattagaagattctttgatttt 6210712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 23506443 - 23506383
Alignment:
Q  66 tttatagggttaataggcttttacctcc-tgtcatttgggggacttttgatttacccccct 125  Q
    ||||| ||||||||||||||||||| || || |||||||||| |||||| |||||||||||    
T  23506443 tttattgggttaataggcttttacccccctgccatttgggggtcttttggtttacccccct 23506383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 47376598 - 47376693
Alignment:
Q  137 cttggagattctccctc-gccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtg 231  Q
    ||||||||||| ||| | ||||||||||||||||||| |||| |||||| | |  || ||||||||  ||| |||| |||||||||||| ||||||    
T  47376598 cttggagattccccccctgccattagaagattctttggttttgaaccctgatagcatgtgactggacaaattagcttatgtggcacgcttactgtg 47376693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 6212553 - 6212504
Alignment:
Q  69 atagggttaataggcttttacctcctgtcatttgggggacttttgattta 118  Q
    ||||| |||||||| ||||||| ||||||||||||||| |||||| ||||    
T  6212553 ataggtttaataggtttttaccccctgtcatttgggggtcttttggttta 6212504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 12861410 - 12861463
Alignment:
Q  70 tagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 123  Q
    ||||||||||||||||||||| ||||  |||||||||  ||||| |||||||||    
T  12861410 tagggttaataggcttttaccccctgctatttgggggtgttttggtttaccccc 12861463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 23504892 - 23504949
Alignment:
Q  69 atagggttaataggctttta-cctcctgtcatttgggggacttttgatttacccccct 125  Q
    |||||||||||||||||||| || |||| |||||||||| |||||  |||||||||||    
T  23504892 atagggttaataggcttttacccccctgccatttgggggtctttttgtttacccccct 23504949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 5169313 - 5169369
Alignment:
Q  72 gggttaataggcttttacctcc-tgtcatttgggggacttttgatttacccccctac 127  Q
    ||||||||||||||||||| || || |||||||| | |||||| |||||||||||||    
T  5169313 gggttaataggcttttacccccctgccatttgggcgtcttttggtttacccccctac 5169369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 17288812 - 17288768
Alignment:
Q  70 tagggttaataggctttta-cctcctgtcatttgggggacttttg 113  Q
    ||||||||||||||||||| || |||| |||||||||||||||||    
T  17288812 tagggttaataggcttttacccccctgccatttgggggacttttg 17288768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 3e-62; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 138 - 330
Target Start/End: Complemental strand, 11151579 - 11151397
Alignment:
Q  138 ttggagattctccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgtgatga 237  Q
    |||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  11151579 ttggagattcccccttgccatgagaagattctttgattttcaaccctcagacaatctgactggattcatgagctgatgtggcacgttaactgtgtgatga 11151480  T
Q  238 tgtggcacgctcactgatgtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 330  Q
    ||          | ||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11151479 tg----------agtgaagtggcactgacacgtcataattttttaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 11151397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 342
Target Start/End: Complemental strand, 39606514 - 39606429
Alignment:
Q  256 gtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctgatgataa 342  Q
    |||||||| |||||||||| ||||||  | |||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||||    
T  39606514 gtggcactgacacgtcatattttttattt-ttttatttttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataa 39606429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 342
Target Start/End: Complemental strand, 54673524 - 54673439
Alignment:
Q  256 gtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctgatgataa 342  Q
    |||||||| |||| ||||||||||| | | |||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||||    
T  54673524 gtggcactgacacatcataattttttatt-ttttatttttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataa 54673439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 342
Target Start/End: Original strand, 48538031 - 48538122
Alignment:
Q  251 ctgatgtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctgatgataa 342  Q
    |||| |||||||| |||||||| | |||||  |  |||||||||||||| |||||| ||||||||||||||| || |||| ||| |||||||    
T  48538031 ctgaagtggcactgacacgtcaaattttttttaatttttatttttaaaattatgttgaaaatgtgaaatacctaatatacccctaatgataa 48538122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 36438828 - 36438770
Alignment:
Q  71 agggttaataggcttttacctcc-tgtcatttgggggacttttgatttacccccctacg 128  Q
    |||||||||||||||||||| || || |||||||||| |||||| ||||||||||||||    
T  36438828 agggttaataggcttttacccccctgccatttgggggtcttttggtttacccccctacg 36438770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 48537849 - 48537902
Alignment:
Q  69 atagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 123  Q
    |||||||||||||||||||||| |||| |||||||||| |||||| |||||||||    
T  48537849 atagggttaataggcttttacc-cctgccatttgggggtcttttggtttaccccc 48537902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 34825709 - 34825745
Alignment:
Q  194 tgactggattaatgagctgatgtggcacgctaactgt 230  Q
    ||||||||||||||||||||||||||||||| |||||    
T  34825709 tgactggattaatgagctgatgtggcacgctgactgt 34825745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 36437336 - 36437376
Alignment:
Q  192 tctgactggattaatgagctgatgtggcacgctaactgtgt 232  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  36437336 tctgactggattaatgagatgatgtggcacgctgactgtgt 36437376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 48165505 - 48165560
Alignment:
Q  71 agggttaataggcttttacctcctgtcatttgggggacttttgatttaccccccta 126  Q
    ||||||||||| ||||||| ||||| ||||||| || |||||| ||||||||||||    
T  48165505 agggttaatagacttttacttcctgccatttggaggtcttttggtttaccccccta 48165560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 54672720 - 54672782
Alignment:
Q  161 gaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgct 224  Q
    |||||||||||||||| || |||||| || || |||||||||||||| | ||||||||||||||    
T  54672720 gaagattctttgatttaca-ccctcaaaccatatgactggattaatgggatgatgtggcacgct 54672782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 15439735 - 15439678
Alignment:
Q  70 tagggttaataggcttttacctcct-gtcatttgggggacttttgatttaccccccta 126  Q
    ||||||||||||||||||||| ||  | |||||||||| |||||| ||||||||||||    
T  15439735 tagggttaataggcttttacccccccgccatttgggggtcttttggtttaccccccta 15439678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 37086609 - 37086543
Alignment:
Q  256 gtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 330  Q
    |||||||| ||||||||||||||||||        |||||||||||||||| |||| |||||||||| |||||||    
T  37086609 gtggcactgacacgtcataatttttaa--------tttttaaaagtatgtttaaaacgtgaaatacctaaaatac 37086543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 52042113 - 52042162
Alignment:
Q  70 tagggttaataggcttttacctcctgtcatttgggggacttttgatttac 119  Q
    ||||||||||||||||||||| |||||||| |||| | |||||| |||||    
T  52042113 tagggttaataggcttttaccccctgtcatatgggtgtcttttggtttac 52042162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 52092761 - 52092696
Alignment:
Q  265 acacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 330  Q
    ||||||||||||||||  || ||||||||||||||| |||||   || |||||||||| |||||||    
T  52092761 acacgtcataatttttttattttttatttttaaaagaatgtttggaaagtgaaatacctaaaatac 52092696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 11150270 - 11150326
Alignment:
Q  71 agggttaataggcttttacctcct-gtcatttgggggacttttgatttaccccccta 126  Q
    |||||||||||||||||||| ||  | ||||||||||| ||||| ||||||||||||    
T  11150270 agggttaataggcttttaccccccagccatttgggggatttttggtttaccccccta 11150326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 34799864 - 34799920
Alignment:
Q  71 agggttaataggcttttacctcc-tgtcatttgggggacttttgatttaccccccta 126  Q
    ||||||||||| |||||||| || || |||||||||| |||||| ||||||||||||    
T  34799864 agggttaatagacttttacccccctgccatttgggggtcttttggtttaccccccta 34799920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 42278510 - 42278454
Alignment:
Q  71 agggttaataggcttttacctcc-tgtcatttgggggacttttgatttaccccccta 126  Q
    |||||||||||||||||||| || |  |||||||||| |||||| ||||||||||||    
T  42278510 agggttaataggcttttacccccctaccatttgggggtcttttggtttaccccccta 42278454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 52090741 - 52090781
Alignment:
Q  137 cttggagattctccctcgccattagaagattctttgatttt 177  Q
    ||||||||| | |||||| ||||||||||||||||||||||    
T  52090741 cttggagatcccccctcgacattagaagattctttgatttt 52090781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 140 - 330
Target Start/End: Complemental strand, 24304294 - 24304114
Alignment:
Q  140 ggagattctccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgtgatgatg 239  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||  |||||||||||||| ||||||||||||||    
T  24304294 ggagatttcccctcgccattagaagattctttgattttcaaccctcaggcaatctgattggattaatgaattgatgtggcacgctgactgtgtgatgatg 24304195  T
Q  240 tggcacgctcactgatgtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 330  Q
              | ||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24304194 ----------agtgaagtggcactgacacgtcataattttttaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 24304114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 342
Target Start/End: Complemental strand, 13970874 - 13970788
Alignment:
Q  256 gtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctgatgataa 342  Q
    |||||||  ||||||||||||||||  || ||||||| |||||| |||||||||||||||||||||| ||||||| ||| |||||||    
T  13970874 gtggcaccgacacgtcataatttttttattttttattgttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataa 13970788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 51676299 - 51676228
Alignment:
Q  161 gaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgt 232  Q
    |||||||||||||||||||||||| |  | ||||||||||||||||||  |||||||||||||| |||||||    
T  51676299 gaagattctttgattttcaaccctgatgccatctgactggattaatgaattgatgtggcacgctgactgtgt 51676228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 51676193 - 51676149
Alignment:
Q  286 ttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 330  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  51676193 ttttatttttaaaagtatgttaaaaatgtgaaatacctaaaatac 51676149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 35712624 - 35712697
Alignment:
Q  256 gtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 330  Q
    |||||||| |||||||||||||||| | | |||||||||||||| |||||||||||  ||||||||| |||||||    
T  35712624 gtggcactgacacgtcataattttttatt-ttttatttttaaaattatgttaaaaagatgaaatacctaaaatac 35712697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 43403352 - 43403296
Alignment:
Q  71 agggttaataggctttta-cctcctgtcatttgggggacttttgatttaccccccta 126  Q
    |||||||||||||||||| || ||||||||||||||| |||||| ||||||||||||    
T  43403352 agggttaataggcttttatccccctgtcatttgggggtcttttggtttaccccccta 43403296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 48030292 - 48030240
Alignment:
Q  70 tagggttaataggcttttacctcctgtcatttgggggacttttgatttacccc 122  Q
    ||||||||||||||||||||| |||| |||||||||| |||||||| ||||||    
T  48030292 tagggttaataggcttttaccccctgccatttgggggtcttttgatatacccc 48030240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 9011032 - 9010958
Alignment:
Q  149 ccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgct 224  Q
    |||| ||||||||||||||||||| ||| || ||| || || ||||||||||||||||| | ||||||||||||||    
T  9011032 cccttgccattagaagattctttggtttacacccc-caaaccatctgactggattaatgtgatgatgtggcacgct 9010958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 17242090 - 17242004
Alignment:
Q  137 cttggagattctccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgct 224  Q
    |||| |||||| |||| ||||||||||||||||||| ||| | |||| || || |||||||| |||||||| | ||||||||||||||    
T  17242090 cttgtagattcccccttgccattagaagattctttggtttac-acccccaaaccatctgactagattaatgtgatgatgtggcacgct 17242004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 224
Target Start/End: Original strand, 24302999 - 24303085
Alignment:
Q  137 cttggagattctccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgct 224  Q
    ||||||||||| |||| || |||||||||||||||||||| | |||||||  | |||||| |||||||||| | |||| |||||||||    
T  24302999 cttggagattcccccttgcaattagaagattctttgatttac-accctcaagccatctgaatggattaatgtgatgatttggcacgct 24303085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 21747941 - 21747998
Alignment:
Q  70 tagggttaataggcttttacctcc-tgtcatttgggggacttttgatttaccccccta 126  Q
    ||||||||||||||||||||| || || |||||||||| |||||| ||||||||||||    
T  21747941 tagggttaataggcttttacccccctgccatttgggggtcttttggtttaccccccta 21747998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 35712574 - 35712615
Alignment:
Q  191 atctgactggattaatgagctgatgtggcacgctaactgtgt 232  Q
    ||||||||||||||||||||||||||| |||||| |||||||    
T  35712574 atctgactggattaatgagctgatgtgacacgctgactgtgt 35712615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 43402261 - 43402314
Alignment:
Q  70 tagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 123  Q
    |||| |||||||||||||||| |||| |||||||||| |||||| |||||||||    
T  43402261 taggattaataggcttttaccccctgccatttgggggtcttttggtttaccccc 43402314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 21749275 - 21749235
Alignment:
Q  137 cttggagattctccctcgccattagaagattctttgatttt 177  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  21749275 cttggagattcccccttgccattagaagattctttgatttt 21749235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 9008761 - 9008812
Alignment:
Q  72 gggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 123  Q
    ||||||||||||||||||| |||| |||||||||| |||||| | |||||||    
T  9008761 gggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 9008812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 49383023 - 49383073
Alignment:
Q  73 ggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 123  Q
    ||||||||| |||||||| |||| ||||| ||||||||||| |||||||||    
T  49383023 ggttaatagacttttaccccctgccatttaggggacttttggtttaccccc 49383073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 51676392 - 51676335
Alignment:
Q  69 atagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccccta 126  Q
    ||||||||||||| |||||||| ||||  ||||||||| |||||| | ||||||||||    
T  51676392 atagggttaatagacttttaccccctgctatttgggggtcttttggtataccccccta 51676335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 42098785 - 42098729
Alignment:
Q  71 agggttaataggctttta-cctcctgtcatttgggggacttttgatttaccccccta 126  Q
    |||||||||||||||||| || |||| |||||||||| |||||| |||| |||||||    
T  42098785 agggttaataggcttttacccccctgccatttgggggtcttttggtttatcccccta 42098729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 49384486 - 49384446
Alignment:
Q  137 cttggagattctccctcgccattagaagattctttgatttt 177  Q
    ||||||||||| ||||||||||| |||||||||||| ||||    
T  49384486 cttggagattccccctcgccatttgaagattctttggtttt 49384446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 137 - 342
Target Start/End: Original strand, 40462337 - 40462532
Alignment:
Q  137 cttggagattctccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgtgatg 236  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||  |||    
T  40462337 cttggagattcccccttgccattagaagattctttgattttcaaccctgaggcaatctgactggattaatgagctgatgtggcacgctgactgtgcaatg 40462436  T
Q  237 atgtggcacgctcactgatgtggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctga 336  Q
    |||          | ||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||| ||| |    
T  40462437 atg----------agtgaagtggcactgacacatcataatttttaaatcttttatttttaaaagtatgttaaaaatctgaaacccccaaaatacccctaa 40462526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 10599125 - 10599200
Alignment:
Q  1 aatgattaggtcttttgcatctcttcttcttcacaacctg-----tatgttcaaaaatcacaattgtttgtttata 71  Q
    ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||    
T  10599125 aatgattaggtcttttgcatctcttcttcttcacaacctgataattatgttcaaaaatcacaattgtttgtttata 10599200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 9755878 - 9755922
Alignment:
Q  286 ttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 330  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  9755878 ttttatttttaaaagtatgttaaaaatgtgaaataccaaaaatac 9755922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 14099743 - 14099796
Alignment:
Q  70 tagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 123  Q
    ||||||||||||||||||||| |||| |||||||||| |||||| |||||||||    
T  14099743 tagggttaataggcttttaccccctgccatttgggggtcttttggtttaccccc 14099796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 26521934 - 26521893
Alignment:
Q  191 atctgactggattaatgagctgatgtggcacgctaactgtgt 232  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  26521934 atctgactggattaatgagctgatgtggcacgctgactgtgt 26521893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 9755775 - 9755846
Alignment:
Q  161 gaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgt 232  Q
    ||||||| |||||||||||||||| |    ||||||||||||||||||| |||||| ||||||| |||||||    
T  9755775 gaagattatttgattttcaaccctaatgtcatctgactggattaatgagttgatgtagcacgctgactgtgt 9755846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 3917795 - 3917849
Alignment:
Q  71 agggttaataggcttttacctcctgtcatttgggggacttttgatttacccccct 125  Q
    |||||||||||||||||||| |||| |||||||| ||| |||| |||||||||||    
T  3917795 agggttaataggcttttaccccctgccatttgggcgacatttggtttacccccct 3917849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 38980214 - 38980160
Alignment:
Q  69 atagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 123  Q
    |||||||||||||| ||||||| ||||||||||||| | |||||| |||||||||    
T  38980214 atagggttaataggtttttaccccctgtcatttgggagtcttttggtttaccccc 38980160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 39011311 - 39011257
Alignment:
Q  69 atagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 123  Q
    |||||||||||||| ||||||| ||||||||||||| | |||||| |||||||||    
T  39011311 atagggttaataggtttttaccccctgtcatttgggagtcttttggtttaccccc 39011257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 14101076 - 14101036
Alignment:
Q  137 cttggagattctccctcgccattagaagattctttgatttt 177  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  14101076 cttggagattcccccttgccattagaagattctttgatttt 14101036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 34315048 - 34314995
Alignment:
Q  257 tggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaa 311  Q
    |||| ||||||||||||||||||| | | |||||||||||||| |||||||||||    
T  34315048 tggccctaacacgtcataattttttatt-ttttatttttaaaattatgttaaaaa 34314995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 34315104 - 34315071
Alignment:
Q  191 atctgactggattaatgagctgatgtggcacgct 224  Q
    |||||||||||||||| |||||||||||||||||    
T  34315104 atctgactggattaataagctgatgtggcacgct 34315071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 42480897 - 42480949
Alignment:
Q  71 agggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 123  Q
    |||||||||||||||||||| |||| ||||| ||||  ||||| |||||||||    
T  42480897 agggttaataggcttttaccccctgccatttaggggttttttggtttaccccc 42480949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 71 - 342
Target Start/End: Original strand, 2759 - 3018
Alignment:
Q  71 agggttaataggctttta-cctcctgtcatttgggggacttttgatttacccccctacgnnnnnnnncttggagattctccctcgccattagaagattct 169  Q
    ||||||||||| |||||| || |||||||| |||| |||||||| |||||||||||| |        ||||||||||| |||| ||||||||||||||||    
T  2759 agggttaatagacttttatccccctgtcatatgggtgacttttggtttaccccccta-ggaaaaaaacttggagattcccccttgccattagaagattct 2857  T
Q  170 ttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgtgatgatgtggcacgctcactgatgtggcactaacacg 269  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||| |||||||          | ||| ||||| || |||||    
T  2858 ttgattttcaaccctgaggcaatctgactggattaatgagctgatgtggcatgctgactgtgcgatgatg----------agtgaagtggc-ctgacacg 2946  T
Q  270 tcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctgatgataa 342  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||| ||| |||||||    
T  2947 tcataatttttaaatcttttatttttaaaagtatgttaaaaatctgaaa-ccccaaaatacccctaatgataa 3018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 27491238 - 27491167
Alignment:
Q  161 gaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgctaactgtgt 232  Q
    |||||||||||| ||| || |||| |  | |||||||||||| |||||||||||||||||||||||||||||    
T  27491238 gaagattctttggtttacacccctgatgccatctgactggatcaatgagctgatgtggcacgctaactgtgt 27491167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 29875946 - 29876000
Alignment:
Q  71 agggttaataggcttttacctcctgtcatttgggggacttttgatttacccccct 125  Q
    |||||||||||||||||||| |||| |||||||| ||| |||| |||||||||||    
T  29875946 agggttaataggcttttaccccctgccatttgggcgacatttggtttacccccct 29876000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 27490097 - 27490151
Alignment:
Q  70 tagggttaataggcttttacct-cctgtcatttgggggacttttgatttaccccc 123  Q
    |||||||||||||||||||||| |||||||| |||||| |||||| | |||||||    
T  27490097 tagggttaataggcttttacctccctgtcatatgggggtcttttggtataccccc 27490151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 27491329 - 27491287
Alignment:
Q  71 agggttaataggcttttacctcctgtcatttgggggacttttg 113  Q
    |||||||||||||||||||| ||||  ||||||||||||||||    
T  27491329 agggttaataggcttttaccccctgcaatttgggggacttttg 27491287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 12605129 - 12605065
Alignment:
Q  265 acacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 330  Q
    ||||||||||||||||| || |||||||||||||||||| || |||| |||||||||| |||||||    
T  12605129 acacgtcataatttttatattttttatttttaaaagtatatttaaaa-gtgaaatacctaaaatac 12605065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 12603936 - 12603991
Alignment:
Q  71 agggttaataggcttttacctcctgtcatttgggggacttttgatttaccccccta 126  Q
    |||||||||||||||||||| |||| |||||||| | |||||| ||||||||||||    
T  12603936 agggttaataggcttttaccccctgccatttgggagtcttttggtttaccccccta 12603991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 330
Target Start/End: Original strand, 21511668 - 21511738
Alignment:
Q  260 cactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 330  Q
    |||| |||||||||||| |||  || ||||||||||||||||||||| ||||| | ||||||| |||||||    
T  21511668 cactgacacgtcataatgtttttattttttatttttaaaagtatgtttaaaatataaaatacctaaaatac 21511738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 25482333 - 25482406
Alignment:
Q  265 acacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatactcctgatga 339  Q
    ||||||||||||||||| || |||||||||||||||||| || |||| | |||||||| ||||||| ||| ||||    
T  25482333 acacgtcataatttttatattttttatttttaaaagtatatttaaaa-gagaaatacctaaaatacccctaatga 25482406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 26545920 - 26545868
Alignment:
Q  74 gttaataggcttttacctcctgtcatttgggggacttttgatttaccccccta 126  Q
    ||||||||||||||||| |||| |||||| ||| |||||| ||||||||||||    
T  26545920 gttaataggcttttaccccctgccatttgagggtcttttggtttaccccccta 26545868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 32146149 - 32146093
Alignment:
Q  69 atagggttaataggctttta-cctcctgtcatttgggggacttttgatttacccccc 124  Q
    |||||||||||||||||||| || |||| |||||||||| |||||| ||||||||||    
T  32146149 atagggttaataggcttttatccccctgccatttgggggtcttttggtttacccccc 32146093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 25483454 - 25483399
Alignment:
Q  71 agggttaataggcttttacctcctgtcatttgggggacttttgatttaccccccta 126  Q
    |||||||||||||||||||| |||| |||||||| | ||||||  |||||||||||    
T  25483454 agggttaataggcttttaccccctgccatttgggagtcttttggattaccccccta 25483399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 5859019 - 5859059
Alignment:
Q  191 atctgactggattaatgagctgatgtggcacgctaactgtg 231  Q
    |||||| |||||||||||| |||||||||||||| ||||||    
T  5859019 atctgattggattaatgagatgatgtggcacgctgactgtg 5859059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 9307129 - 9307089
Alignment:
Q  137 cttggagattctccctcgccattagaagattctttgatttt 177  Q
    ||||||||||| ||||||||||| ||| |||||||||||||    
T  9307129 cttggagattccccctcgccatttgaatattctttgatttt 9307089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 3977 - 3925
Alignment:
Q  71 agggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 123  Q
    |||||||||||||||||||| |||| ||||||||||||||||| |||| ||||    
T  3977 agggttaataggcttttaccccctgccatttgggggacttttggtttatcccc 3925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 386 - 440
Alignment:
Q  72 gggttaataggcttttacctcc-tgtcatttgggggacttttgatttacccccct 125  Q
    ||||||||||||||||||| || || ||||||||||||||||| |||||| ||||    
T  386 gggttaataggcttttacccccctgccatttgggggacttttggtttacctccct 440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 224
Target Start/End: Original strand, 5737244 - 5737330
Alignment:
Q  137 cttggagattctccctcgccattagaagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggcacgct 224  Q
    |||| |||||| |||| ||||||||||||||||||| ||| | |||| || || |||||||| |||||||| | ||||||||||||||    
T  5737244 cttgtagattcccccttgccattagaagattctttggtttac-acccccaaaccatctgactagattaatgtgatgatgtggcacgct 5737330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 19628235 - 19628181
Alignment:
Q  72 gggttaataggcttttacctcctgtcatttgggggacttttgatttaccccccta 126  Q
    ||||||||||| ||||||| |||| |||||||| | |||||| ||||||||||||    
T  19628235 gggttaataggtttttaccccctgccatttgggagtcttttggtttaccccccta 19628181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 47578535 - 47578501
Alignment:
Q  198 tggattaatgagctgatgtggcacgctaactgtgt 232  Q
    ||||||||||||||||||||||||||| |||||||    
T  47578535 tggattaatgagctgatgtggcacgctgactgtgt 47578501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 12628031 - 12628088
Alignment:
Q  70 tagggttaataggctttta-cctcctgtcatttgggggacttttgatttaccccccta 126  Q
    ||||||||||||||||||| || |||| |||||| ||| |||||| ||||||||||||    
T  12628031 tagggttaataggcttttacccccctgccatttgcgggtcttttggtttaccccccta 12628088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 23526644 - 23526571
Alignment:
Q  257 tggcactaacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatac 330  Q
    ||||||| ||||||||| ||||||| || || |||||||  ||  ||| ||||||||||||||||| |||||||    
T  23526644 tggcactgacacgtcattatttttatattttatatttttttaaaaatgctaaaaatgtgaaatacctaaaatac 23526571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 29043555 - 29043522
Alignment:
Q  191 atctgactggattaatgagctgatgtggcacgct 224  Q
    ||||||||||||||||||||||||||||||||||    
T  29043555 atctgactggattaatgagctgatgtggcacgct 29043522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 10085 - 10136
Alignment:
Q  70 tagggttaataggcttttacctcctgtcatttgggggacttttgatttacccc 122  Q
    ||||||||||||||||||||| |||| |||||||||| |||||| ||||||||    
T  10085 tagggttaataggcttttacc-cctgccatttgggggtcttttggtttacccc 10136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 11534 - 11587
Alignment:
Q  70 tagggttaataggcttttacctcctgtcatttgggggacttttgatttaccccc 123  Q
    ||||||||||||||||||||| |||| |||||||| | ||||||  ||||||||    
T  11534 tagggttaataggcttttaccccctgccatttgggagtcttttggattaccccc 11587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 22456 - 22513
Alignment:
Q  70 tagggttaataggcttttacctcct-gtcatttgggggacttttgatttaccccccta 126  Q
    ||||||||||||||||||||| ||  | |||||||||| |||||| ||||||||||||    
T  22456 tagggttaataggcttttacccccccgccatttgggggtcttttggtttaccccccta 22513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 9880 - 9936
Alignment:
Q  162 aagattctttgattttcaaccctcagacaatctgactggattaatgagctgatgtggc 219  Q
    ||||||||||||||| |  |||| |||| ||||||||||||||||||| |||||||||    
T  9880 aagattctttgatttacc-ccctaagaccatctgactggattaatgagatgatgtggc 9936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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