View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_high_9 (Length: 547)
Name: NF11183_high_9
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 21 - 540
Target Start/End: Complemental strand, 45403447 - 45402928
Alignment:
| Q |
21 |
tttaaggaatcaagatcaacaacttcacgaaaatatcgttctcctttaaacatcgccacaaaacctatttttcaaaacctagggctagaaattaataaca |
120 |
Q |
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| T |
45403447 |
tttaaggaatcaagatcaacaacttcacgaaaatatcgttcccctttaaacatcgccacaaaacctatttttcaaaacctagggctagaaattaataaca |
45403348 |
T |
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| Q |
121 |
gcattatttctcctagagaactcatgtttagtcttcaaagagattcttcatcatcagaagaagaaacatggaagaatcatgatgtggcagctagagagac |
220 |
Q |
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| T |
45403347 |
gcattatttctcctagagaactcatgtttagtcttcaaagagattcttcatcatcagaagaagaaacatggaagaatcatgatgtggcagctagagagac |
45403248 |
T |
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| Q |
221 |
tctccaagaacgtagagaagctattgagagaggaaaattgaagggccgaagactttttgattcaaccatggagagtgagagtgatgataacgacaacaac |
320 |
Q |
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| T |
45403247 |
tctccaagaacgtagagaagctattgagagaggaaaattgaagggccgaagactttttgattcaaccatggagagtgagagtgatgataacgacaacaac |
45403148 |
T |
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| Q |
321 |
ataggtcaaaagtatgaagtgaggtcaatgtctttttgttacttggaggatgaacatgagcatgagaatgaatcgttgtcttcttctttgtctcctattg |
420 |
Q |
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| T |
45403147 |
ataggtcaaaattatgaagtgaggtcaatgtctttttgttacttggaggatgaacatgagcatgagaatgaatcgttgtcttcttctttgtctcctattg |
45403048 |
T |
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| Q |
421 |
gtgattttgtggacaaggatatggtgactaacgtagcagatattaaagttgggagtaagtctaggtttgctaatggaacaaggtatgttgttttcttagg |
520 |
Q |
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| T |
45403047 |
gtgattttgtggacaaggatatgatgactaacgtagcagatattaaagttgggagtaagtctaggtttgctaatggaacaaggtatgttgttttcttagg |
45402948 |
T |
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| Q |
521 |
tgggtttgttgcctttgctt |
540 |
Q |
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| T |
45402947 |
tgggtttgttgcctttgctt |
45402928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 528
Target Start/End: Complemental strand, 45402124 - 45402087
Alignment:
| Q |
491 |
taatggaacaaggtatgttgttttcttaggtgggtttg |
528 |
Q |
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| T |
45402124 |
taatggaacaaggtatgttgtttacttaggttggtttg |
45402087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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