View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_1 (Length: 969)
Name: NF11183_low_1
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 413 - 957
Target Start/End: Original strand, 48755238 - 48755756
Alignment:
| Q |
413 |
acaaaagtcttgcacatgaattatatcttgtcaaatgtgaatatgtgatacacnnnnnnnnaagtatattacatttgatataacttgttgcaattgtatt |
512 |
Q |
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| T |
48755238 |
acaaaagtcttgcaaatgaattatatcttgtcaaatgtgaatatgtgatacacttttttttaagtat--tacatttgatataacttgttgcaattgtatt |
48755335 |
T |
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| Q |
513 |
tcttgttagttttttagtgttccttggattccttttgtatttatgttacaatcttgatctttgggaagagttggaaaatatcaacaccaacattcttgga |
612 |
Q |
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| T |
48755336 |
tcttgttagttttttagtgttccttggattccttttgtatttatgttacaatcttgatctttgggaagagttggaaaatatcaacaccaacattcttgga |
48755435 |
T |
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| Q |
613 |
tcttttacnnnnnnnaatcacattaggccttgattgctcagtatcagacaatatcagctcaagtctactggataattttacttgtcttttaagtcaatgt |
712 |
Q |
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| T |
48755436 |
tcttttactttttttaatcacattaggccttgattgctcagtatcagacaatatcagctcaagtcta-tggataattttacttg---------------t |
48755519 |
T |
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| Q |
713 |
cttttacttcaacatgtaataaccatatattttttccggttgtcaaacatggtatagagatgatcgtgcagtggaatcaagagataaaggtaggaaggtc |
812 |
Q |
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| T |
48755520 |
ctttta--------tgtaataaccatatattttttccggttgtcaaacatggtatagagatgatcgtgcagtggaatcaagagataaaggtaggaaggtc |
48755611 |
T |
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| Q |
813 |
tgaatcttatttatttgcaggtctgaaactatttacttgtttgataaaatacaaaagttaacgacctagaaggattcccttgtctcaccctatctgttat |
912 |
Q |
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| T |
48755612 |
tgaatcttatctatttgcaggtctgaaactatttacttgtttgataaaatgcaaaagttaacgacctagaaggattcccttgtctccccctatctattat |
48755711 |
T |
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| Q |
913 |
cgccattatgagcgattaagccttgaactgtatttgttgatgtcc |
957 |
Q |
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| T |
48755712 |
cgcctttatgagcgattaagccttgaactgtatttgttgatgtcc |
48755756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 48754843 - 48755175
Alignment:
| Q |
18 |
gttattgttcggattattatgcaaaacttgttatttactaattttgaatgggttttactgttgctctggattttggaccatacttttgttactatttttg |
117 |
Q |
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| T |
48754843 |
gttatttttcggattattatgcaaacctttttatttactaattttgaatgggttttaccgttgctctggattttggaccatacttttgttactatttttg |
48754942 |
T |
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| Q |
118 |
gagtcttttagtttttaatgtggctatggattgtggaccatacttttctaaagattggtcgtaatttatttacttatctaagagtaaatgtttttactct |
217 |
Q |
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| T |
48754943 |
gagtcttttagtttttaatgtgactatggattgtggaccatacttttctaaagattggtcgtaatttatttacttatctaagagtaaatgtttttactct |
48755042 |
T |
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| Q |
218 |
tttgtacagatcattttgtacttgtccgagtttatatattgatgaaattgatttgaattttcttctaatgcttaatgcttttggtatttatcatatcatt |
317 |
Q |
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| T |
48755043 |
tttgtacaaatcattttgtacttgtccgagtttatatattgatgaaattgatttgaattttcttctaatgcttaatgcttttggtatttatcatatcatt |
48755142 |
T |
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| Q |
318 |
catatgtgatggtgctttcaaggatgcttggta |
350 |
Q |
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| T |
48755143 |
catatgtgatggtgctttcaaggatgcttggta |
48755175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 763 - 824
Target Start/End: Complemental strand, 11326842 - 11326781
Alignment:
| Q |
763 |
ggtatagagatgatcgtgcagtggaatcaagagataaaggtaggaaggtctgaatcttattt |
824 |
Q |
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| T |
11326842 |
ggtatagatatgatcttgcagtggaatcaagagataaaggcaggaaggtcttaatcttattt |
11326781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 763 - 824
Target Start/End: Complemental strand, 11484863 - 11484802
Alignment:
| Q |
763 |
ggtatagagatgatcgtgcagtggaatcaagagataaaggtaggaaggtctgaatcttattt |
824 |
Q |
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| T |
11484863 |
ggtatagatatgatcttgcagtggaatcaagagataaaggcaggaaggtcttaatcttattt |
11484802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 784 - 874
Target Start/End: Original strand, 47800250 - 47800340
Alignment:
| Q |
784 |
tggaatcaagagataaaggtaggaaggtctgaatcttatttatttgcaggtctgaaactatttacttgtttgataaaatacaaaagttaac |
874 |
Q |
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| T |
47800250 |
tggaatcaagagataacgatatgaatgtctgaaggttatctgtttgcaggtctgaatctatttgtttatttgataaaattcaaaggttaac |
47800340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 44453160 - 44453206
Alignment:
| Q |
179 |
taatttatttacttatctaagagtaaatgtttttactcttttgtaca |
225 |
Q |
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| T |
44453160 |
taatttatttacttatttaagagaaaatgtttttattcttttttaca |
44453206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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