View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_10 (Length: 551)
Name: NF11183_low_10
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 258 - 532
Target Start/End: Complemental strand, 9083848 - 9083562
Alignment:
| Q |
258 |
ataagcttatttaattctaggtctta-cttacatttgattacagctactgagagctaatgcagttatgtgatatcattgtactaaattagtgtaaagaaa |
356 |
Q |
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| T |
9083848 |
ataagcttatttaattctaggtcttaacttacatttgattacagctactgagagctaatgcagttatgtgatatcattgtactaaattagtgtaaagaaa |
9083749 |
T |
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| Q |
357 |
attttgagataaaccattttcatcttcttgtatatagatatgacttatatgaagtagacgacccttttgt-tcttgtctccattctgttttgttctatac |
455 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9083748 |
attttgagataaaccattttcagcttcttgtatatagatatgacttatatgaagtagacgacccttttgtagcttgtctccattctgttttgttctatac |
9083649 |
T |
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| Q |
456 |
ttctatttta----------tctaaacaaagaacaataccatatgagacagtaatttagccgtgtggatttgttcttgccaaagttt |
532 |
Q |
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| T |
9083648 |
ttctattttatctttagttttctaaacaaagaacaataccatatgagacagtaatctagccgtgtggatttgttcttgccaaagttt |
9083562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9084106 - 9083884
Alignment:
| Q |
1 |
aaagtgttattctgtaatttgattttgatcgatattgacattttctgattattggtatgtttccaggactttcaacttggagagacagttagaagtttac |
100 |
Q |
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| T |
9084106 |
aaagtgttattctgtaatttgattttgatcgatattgacattttctgattattggtatgtttccaggactttcaacttggagagacagttagaagtttac |
9084007 |
T |
|
| Q |
101 |
ctcattgtcatcacatgtttcatctaccttgcatagatatgtggcttttaaggcatggttcttgcccattatgcagaagggatctgtaattttgtatatg |
200 |
Q |
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| T |
9084006 |
ctcattgtcatcacatgtttcatctaccttgcatagatatgtggcttttaaggcatggttcttgcccattatgcagaagggatctgtaattttgtatatg |
9083907 |
T |
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| Q |
201 |
aatagcactgatcgtaaaagagg |
223 |
Q |
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| T |
9083906 |
aatagcactgatcgtaaaagagg |
9083884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 31663804 - 31663932
Alignment:
| Q |
64 |
caggactttcaacttggagagacagttagaagtttacctcattgtcatcacatgtttcatctaccttgcatagatatgtggcttttaaggcatggttctt |
163 |
Q |
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| T |
31663804 |
caggatttccaaattggagaaacggttaggagcttgccccattgtcatcatatgtttcacataccttgcattgacaagtggctcatcaagcatggctcgt |
31663903 |
T |
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| Q |
164 |
gcccattatgcagaagggatctgtaattt |
192 |
Q |
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| T |
31663904 |
gcccattatgcagaagatttctgtaattt |
31663932 |
T |
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