View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11183_low_12 (Length: 531)

Name: NF11183_low_12
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11183_low_12
NF11183_low_12
[»] chr1 (7 HSPs)
chr1 (176-518)||(8749498-8749844)
chr1 (264-518)||(8758761-8759015)
chr1 (303-510)||(8767096-8767303)
chr1 (18-111)||(8749909-8750009)
chr1 (18-62)||(27413374-27413418)
chr1 (333-372)||(1221250-1221289)
chr1 (18-62)||(5953489-5953533)
[»] chr3 (5 HSPs)
chr3 (19-62)||(23708238-23708281)
chr3 (19-62)||(23726694-23726737)
chr3 (19-62)||(23745150-23745193)
chr3 (19-62)||(24063675-24063718)
chr3 (26-58)||(23607631-23607663)
[»] scaffold0092 (1 HSPs)
scaffold0092 (17-62)||(5917-5962)
[»] chr7 (4 HSPs)
chr7 (26-62)||(21861321-21861357)
chr7 (26-62)||(21861556-21861592)
chr7 (26-62)||(26028982-26029018)
chr7 (26-62)||(48661576-48661612)
[»] chr6 (1 HSPs)
chr6 (18-62)||(6623423-6623467)
[»] chr5 (1 HSPs)
chr5 (18-62)||(24531626-24531670)
[»] chr4 (2 HSPs)
chr4 (26-62)||(39110779-39110815)
chr4 (26-62)||(53559311-53559347)
[»] chr2 (1 HSPs)
chr2 (18-62)||(40149016-40149060)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 176 - 518
Target Start/End: Complemental strand, 8749844 - 8749498
Alignment:
Q  176 cagaagcatttttaaatatcgtaccagtgtctcaatcctaaggacgatttaagaggcattgtagatcattattacaaatttgagtccat----tgttgcg 271  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    ||||| |    
T  8749844 cagaagcatttttaaatatcgtaccagtgtctcagtcctaaggacgatttaagaggcattgtagatcattattacaattttgagtccatgcattgttgtg 8749745  T
Q  272 ccatgcttttgaaatattttacgatgattaatttcttttgttttggcagctacccaggcatttgagaaaatggcaagttttggaataatgccaaacatga 371  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  8749744 ccatgcttttgaaatattttttgatgatcaatttcttttgttttggcagctacccaggcatttgagaaaatggcaacttttggaatattgccaaacatga 8749645  T
Q  372 ttctgtatttaacaagacattatgggatggaagctgcaacagctactaatgtgatcctccgctggtcagcagctactaattttacaccaattatcggtgc 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8749644 ttctgtatttaacaagacattatgggatggaagctgcaacagctactaatgtgatcctccgctggtcagcagctactaattttacaccaattatcggtgc 8749545  T
Q  472 ttttcttgccgattcttactttggccgctacgctaccattgcctttg 518  Q
    ||||||||||||||| || ||||| |||||||||||||| |||||||    
T  8749544 ttttcttgccgattcctattttggtcgctacgctaccatcgcctttg 8749498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 264 - 518
Target Start/End: Complemental strand, 8759015 - 8758761
Alignment:
Q  264 ttgttgcgccatgcttttgaaatattttacgatgattaatttcttttgttttggcagctacccaggcatttgagaaaatggcaagttttggaataatgcc 363  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  8759015 ttgttgcgccatacttttgaaatattttatgatgatgaatttcttttgttttggcagcaaaccaggcatttgagaaaatggcaagttttggaatattgcc 8758916  T
Q  364 aaacatgattctgtatttaacaagacattatgggatggaagctgcaacagctactaatgtgatcctccgctggtcagcagctactaattttacaccaatt 463  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  ||||||| ||||||||||||| ||||||||| ||||||| ||| |||||||||    
T  8758915 aaacatgattctgtatttaacaagacattatgagatggaagctgctgcagctaccaatgtgatcctcctctggtcagctgctactagtttcacaccaatt 8758816  T
Q  464 atcggtgcttttcttgccgattcttactttggccgctacgctaccattgcctttg 518  Q
     | || ||||||||||| ||||| |||||||| ||||||  |||||||| |||||    
T  8758815 gttggagcttttcttgctgattcctactttggtcgctaccttaccattgtctttg 8758761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 303 - 510
Target Start/End: Complemental strand, 8767303 - 8767096
Alignment:
Q  303 tttcttttgttttggcagctacccaggcatttgagaaaatggcaagttttggaataatgccaaacatgattctgtatttaacaagacattatgggatgga 402  Q
    |||| |||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8767303 tttcctttgttttggcagcgagccagtcatttgagaaaatggcaagttttggaatattgccaaacatgattctgtatttaacaagacattatgggatgga 8767204  T
Q  403 agctgcaacagctactaatgtgatcctccgctggtcagcagctactaattttacaccaattatcggtgcttttcttgccgattcttactttggccgctac 502  Q
    | || |   |||||| ||||||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||    
T  8767203 aactcctgtagctaccaatgtgatcctcctctggtcagcagctactaatttcacaccaattcttggtgcttttcttgctgattcttactttggccgctac 8767104  T
Q  503 gctaccat 510  Q
     |||||||    
T  8767103 cctaccat 8767096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 8750009 - 8749909
Alignment:
Q  18 gttggacataacacaatctcacaaaatcggcttgtaaggtgaggaat---cccatttacaaac----atgaaagtatttaacataaaactcaatttactt 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |   |||||||||||||    |||||||||||||||||||||||||||||||||    
T  8750009 gttgaacataacacaatctcacaaaatcggcttgtaaggtgaggactatccccatttacaaacatatatgaaagtatttaacataaaactcaatttactt 8749910  T
Q  111 t 111  Q
    |    
T  8749909 t 8749909  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 27413418 - 27413374
Alignment:
Q  18 gttggacataacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    ||||||| |||||||| |||||||||||||||||| |||||||||    
T  27413418 gttggacctaacacaacctcacaaaatcggcttgtgaggtgagga 27413374  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 372
Target Start/End: Original strand, 1221250 - 1221289
Alignment:
Q  333 ttgagaaaatggcaagttttggaataatgccaaacatgat 372  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  1221250 ttgagaaagtggcaagttatggaataatgccaaacatgat 1221289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 5953489 - 5953533
Alignment:
Q  18 gttggacataacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    |||||| ||||||||| ||||||||||||||| || |||||||||    
T  5953489 gttggaaataacacaacctcacaaaatcggctcgtgaggtgagga 5953533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 23708238 - 23708281
Alignment:
Q  19 ttggacataacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    |||||| |||||||||||||||||| |||||||| |||||||||    
T  23708238 ttggacctaacacaatctcacaaaaccggcttgtgaggtgagga 23708281  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 23726694 - 23726737
Alignment:
Q  19 ttggacataacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    |||||| |||||||||||||||||| |||||||| |||||||||    
T  23726694 ttggacctaacacaatctcacaaaaccggcttgtgaggtgagga 23726737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 23745150 - 23745193
Alignment:
Q  19 ttggacataacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    |||||| |||||||||||||||||| |||||||| |||||||||    
T  23745150 ttggacctaacacaatctcacaaaaccggcttgtgaggtgagga 23745193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 24063675 - 24063718
Alignment:
Q  19 ttggacataacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    |||||| |||||||||||||||||| |||||||| |||||||||    
T  24063675 ttggacctaacacaatctcacaaaaccggcttgtgaggtgagga 24063718  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 23607631 - 23607663
Alignment:
Q  26 taacacaatctcacaaaatcggcttgtaaggtg 58  Q
    ||||||||||||||||||||||||||| |||||    
T  23607631 taacacaatctcacaaaatcggcttgtgaggtg 23607663  T

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Target: scaffold0092 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 5962 - 5917
Alignment:
Q  17 agttggacataacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    |||||||| |||||||| || |||||||||||||| ||||||||||    
T  5962 agttggacctaacacaacctaacaaaatcggcttgaaaggtgagga 5917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 21861357 - 21861321
Alignment:
Q  26 taacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  21861357 taacacaatcccacaaaaccggcttgtaaggtgagga 21861321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 21861592 - 21861556
Alignment:
Q  26 taacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    |||||||| | ||||||||||||||||||||||||||    
T  21861592 taacacaaccccacaaaatcggcttgtaaggtgagga 21861556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 26028982 - 26029018
Alignment:
Q  26 taacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    |||||||| |||||||||||||||||| |||||||||    
T  26028982 taacacaacctcacaaaatcggcttgtgaggtgagga 26029018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 48661576 - 48661612
Alignment:
Q  26 taacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    |||||||||||||||||| |||||||| |||||||||    
T  48661576 taacacaatctcacaaaaccggcttgtgaggtgagga 48661612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 6623423 - 6623467
Alignment:
Q  18 gttggacataacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    ||||||| |||||||| | ||||||| ||||||||||||||||||    
T  6623423 gttggacctaacacaaccccacaaaaccggcttgtaaggtgagga 6623467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 24531670 - 24531626
Alignment:
Q  18 gttggacataacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    ||||| |||||||||| | |||||||||||||||| |||||||||    
T  24531670 gttgggcataacacaaccccacaaaatcggcttgtgaggtgagga 24531626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 39110815 - 39110779
Alignment:
Q  26 taacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    |||| |||||| |||||||||||||||||||||||||    
T  39110815 taactcaatcttacaaaatcggcttgtaaggtgagga 39110779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 53559311 - 53559347
Alignment:
Q  26 taacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    |||||||| | ||||||||||||||||||||||||||    
T  53559311 taacacaaccccacaaaatcggcttgtaaggtgagga 53559347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 40149016 - 40149060
Alignment:
Q  18 gttggacataacacaatctcacaaaatcggcttgtaaggtgagga 62  Q
    ||||||| |||||||| | |||||||||||||||| |||||||||    
T  40149016 gttggacctaacacaaccccacaaaatcggcttgtgaggtgagga 40149060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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