View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_18 (Length: 436)
Name: NF11183_low_18
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 39373728 - 39374134
Alignment:
| Q |
19 |
atcccatccaaacccactagtgttcatcatgtcaacaacttcattaagctttgttgaccaccttttcatcttgttaacaatttgcttggcattgataagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39373728 |
atcccatccaaacccactagtgttcatcatgtcaacaacttcattaagctttgttgaccaccttttcatcttgttaacaatttgcttggcattgataagt |
39373827 |
T |
|
| Q |
119 |
attcctcgaattttatttttcattctcttgcaaatttcctcatgagttccagtcttgaatgttccattctctcctttgtttccagccaccaccatctctt |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39373828 |
attcctggaattttatttttcattctcttgcaaacttcctcatgagttccagtcttgaatgttccattctctcctttgtttccagccaccaccatctctt |
39373927 |
T |
|
| Q |
219 |
ctaatatagtgagtaaagtttcttcttcaattgcattccaattacgtcaggctctaatgttactcatggattgttcactattaatcccaccatcattttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
39373928 |
ctaatatagtgagtaaagtttcttcttcaattgcattccaattacgtcggactctaatgttactcatggattgttcactattaatcccaccataattttc |
39374027 |
T |
|
| Q |
319 |
catttctaaatagtnnnnnnnnnntcaaaaggttgtgacattcacatattaataagttcaataaggattatgacaatcacatattaataagttcacactt |
418 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39374028 |
catttctaaatagtaaaaaaaaaattaaaaggttgtgacattcacatattaataagttcaataaggattatgacaatcacatattaataagttcacactt |
39374127 |
T |
|
| Q |
419 |
cattcat |
425 |
Q |
| |
|
||||||| |
|
|
| T |
39374128 |
cattcat |
39374134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 17051408 - 17051004
Alignment:
| Q |
19 |
atcccatccaaacccactagtgttcatcatgtcaacaacttcattaagctttgttgaccaccttttcatcttgttaacaatttgcttggcattgataagt |
118 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17051408 |
atcccaaccaaacccaccagtgttcatcatgtcaacaacttcattaagctttgttgaccaccttttcatcttgttaacaatttgcttggcattgataagt |
17051309 |
T |
|
| Q |
119 |
attcctcgaattttatttttcattctcttgcaaatttcctcatgagttccagtcttgaatgttccattctctcctttgtttccagccaccaccatctctt |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17051308 |
attcctggaattttatttttcattctcttgcaaacttcctcatgagttacagtcttgaatgttccattctctcctttgtttccagcaaccaccatctctt |
17051209 |
T |
|
| Q |
219 |
ctaatatagtgagtaaagtttcttcttcaattgcattccaattacgtcaggctctaatgttactcatggattgttcactattaatcccaccatcattttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
17051208 |
ctaatatagtgagtaaagtttcttcttcaattgcattccaattacgtcgggctctaatgttactcatggattgttcactattaatcccaccctcagtttc |
17051109 |
T |
|
| Q |
319 |
catttctaaatagtnnnnnnnnnntcaaaaggttgtgacattcacatattaataagttcaataaggattatgacaatcacatattaataagttcacactt |
418 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17051108 |
catttctaaatagt--aaaaaaaatcaaaaggttgtgacattcacatattaataagttcaataaggataatgacaatcacatattaataagttcacactt |
17051011 |
T |
|
| Q |
419 |
cattcat |
425 |
Q |
| |
|
||||||| |
|
|
| T |
17051010 |
cattcat |
17051004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 48534581 - 48534177
Alignment:
| Q |
19 |
atcccatccaaacccactagtgttcatcatgtcaacaacttcattaagctttgttgaccaccttttcatcttgttaacaatttgcttggcattgataagt |
118 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48534581 |
atcccaaccaagcccactagtgttcatcatgtcaacaacttcattaagctttgttgaccaccttttcatcttgttaacaatttgcttggcattgataagt |
48534482 |
T |
|
| Q |
119 |
attcctcgaattttatttttcattctcttgcaaatttcctcatgagttccagtcttgaatgttccattctctcctttgtttccagccaccaccatctctt |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
48534481 |
attcctagaattttatttttcattctcttgcaaacttcctcatgagtttcagtcttgaatgttccattctgtcctttgtttccagcaaccaccatctctt |
48534382 |
T |
|
| Q |
219 |
ctaatatagtgagtaaagtttcttcttcaattgcattccaattacgtcaggctctaatgttactcatggattgttcactattaatcccaccatcattttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
48534381 |
ctaatatagtgagtaaagtttcttcttcaattgcattccaattacgtcgggctctaatgttactcatggattgttcactattaatcctaccctcattttc |
48534282 |
T |
|
| Q |
319 |
catttctaaatagtnnnnnnnnnntcaaaaggttgtgacattcacatattaataagttcaataaggattatgacaatcacatattaataagttcacactt |
418 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48534281 |
catttctaaatagt--aaaaaaaatcaaaaggttgtgacattcacatattaataagttcaataaggataatgacaatcacatattaataagttcacactt |
48534184 |
T |
|
| Q |
419 |
cattcat |
425 |
Q |
| |
|
||||||| |
|
|
| T |
48534183 |
cattcat |
48534177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 33311627 - 33311528
Alignment:
| Q |
19 |
atcccatccaaacccactagtgttcatcatgtcaacaacttcattaagctttgttgaccaccttttcatcttgttaacaatttgcttggcattgataagt |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33311627 |
atcccatccaaacccactagtattcatcatgtcaacaacttcattaagctttgttgaccactttttcatcttgttaataatttgcttggcattgataagt |
33311528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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