View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_19 (Length: 427)
Name: NF11183_low_19
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_19 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Complemental strand, 8798395 - 8797985
Alignment:
| Q |
17 |
ttaccttgcggagggtgtggggcaaaaagtgatggtataatcagcagaagcacaagtgaaagtgctagttccatcatcataagcgtaactataagcgcgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8798395 |
ttaccttgcggagggtgtggggcaaaaagtgatggtataatcagcagaagcacaagtgaaagtgctagttccatcatcataagcgtaactataagcgcgt |
8798296 |
T |
|
| Q |
117 |
ggacacgcactcttaaaaaactgcgagtaggaacttggtttacacgtatccggggaaccataagcgccactgcagcaatattgcggatccccaaacgctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8798295 |
ggacacgcactcttaaaaaactgcgagtaggaacttggtttacacgtatccggggaaccataagcgccactgcagcaatattgcggatccccaaacgctt |
8798196 |
T |
|
| Q |
217 |
cacacgcgcttttacacgccacgctctcttcaccgccgttattactacttatcactttcaactccatcggacacgccgcgtttaagtcgacggagcaacc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8798195 |
cacacgcgcttttacacgccacgctctcttcaccgccgttattactacttatcactttcaactccatcggacacgccgcgtttaagtcgacggagcaacc |
8798096 |
T |
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| Q |
317 |
cgttgccgtgcagtttccgccgccggtttcaccgtgtggttcgattaatattgggagattgtaaccgtcgacgagactaacgtcgaagaaatcaagtcct |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8798095 |
cgttgccgtgcagtttccgccgccggtttcaccgtgtggttcgattaatattgggagattgtaaccgtcgacgagactaacgtcgaagaaatcaagtcct |
8797996 |
T |
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| Q |
417 |
ccggaaccgtt |
427 |
Q |
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| T |
8797995 |
ccggaaccgtt |
8797985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 8810919 - 8810846
Alignment:
| Q |
39 |
caaaaagtgatggtataatcagcagaagcacaagtgaaagtgctagttccatcatcataagcgtaactataagc |
112 |
Q |
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| T |
8810919 |
caaaatgtgattgtataatcagcaccagaacaagtaaaagtgctagttttatcatcataagcgtaactataagc |
8810846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 32 - 415
Target Start/End: Original strand, 14039250 - 14039621
Alignment:
| Q |
32 |
tgtggggcaaaaagtgatggtataatcagcagaagcacaagtgaaagtgctagttccatcatcataagcgtaactataagcgcgtggacacgcactctta |
131 |
Q |
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|||||| ||||||||||| ||||||||||||||| ||||||| |||||||| ||| |||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
14039250 |
tgtgggacaaaaagtgatagtataatcagcagaatcacaagtaaaagtgcttgtttcatcatcataagcgtagctataagcgcgaggacaagcactcttg |
14039349 |
T |
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| Q |
132 |
aaaaactgcgagtaggaacttggtttacacgtatccggggaaccataagcgccactgcagcaatattgcggatccccaaacgcttcacacgcgcttttac |
231 |
Q |
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|||||||| ||||| |||||||| || || |||| || ||| | ||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |
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| T |
14039350 |
aaaaactgtgagtatgaacttggcttgcatgtatttggagaagcgtaagcgccactacaacaatattgtggatccccaaacgcttcacacgcgcttttac |
14039449 |
T |
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| Q |
232 |
acgccacgctctcttcaccgccgttattactacttatcactttcaactccatcggacacgccgcgtttaagtcgacggagcaacccgttgccgtgcagtt |
331 |
Q |
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| T |
14039450 |
acgctacac------ctccgcc------attactcatcactttcaactcggttggacatgccgcgttcaaatccaccatgcaacctgttgtcatgcagtt |
14039537 |
T |
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| Q |
332 |
tccgccgccggtttcaccgtgtggttcgattaatattgggagattgtaaccgtcgacgagactaacgtcgaagaaatcaagtcc |
415 |
Q |
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| T |
14039538 |
tccgcctccggttgctccttgtggttcgatcatcattgggaggttgtaaccgtccacgagactaacgtcgaagaaatcaagtcc |
14039621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 32 - 415
Target Start/End: Original strand, 18954221 - 18954592
Alignment:
| Q |
32 |
tgtggggcaaaaagtgatggtataatcagcagaagcacaagtgaaagtgctagttccatcatcataagcgtaactataagcgcgtggacacgcactctta |
131 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||| |
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| T |
18954221 |
tgtgggacaaaaagtgatggtataatctgcagaagcacaagcgaaagtgcttgttccatcatcataagcataactataagcacgtggacatgcactctta |
18954320 |
T |
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| Q |
132 |
aaaaactgcgagtaggaacttggtttacacgtatccggggaaccataagcgccactgcagcaatattgcggatccccaaacgcttcacacgcgcttttac |
231 |
Q |
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|| || || ||||| |||||||| || || ||||| || | | | ||||||||| | || ||||||||| |||| ||||||||||||||||||||||||| |
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| T |
18954321 |
aagaattgtgagtacgaacttggcttgcatgtatctggagtagcgtaagcgccattacaacaatattgcagatctccaaacgcttcacacgcgcttttac |
18954420 |
T |
|
| Q |
232 |
acgccacgctctcttcaccgccgttattactacttatcactttcaactccatcggacacgccgcgtttaagtcgacggagcaacccgttgccgtgcagtt |
331 |
Q |
| |
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|||| || || ||| |||| |||| |||||||||||||| | |||||||||| ||| || || || |||||| |||| | ||||||| |
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| T |
18954421 |
acgctacact-gctt-----ccgt------tactcatcactttcaactcggttggacacgccgtgttcaaatccaccatgcaacctgttgtcatgcagtt |
18954508 |
T |
|
| Q |
332 |
tccgccgccggtttcaccgtgtggttcgattaatattgggagattgtaaccgtcgacgagactaacgtcgaagaaatcaagtcc |
415 |
Q |
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||| || |||||| | || |||||| ||| || | ||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18954509 |
tccacccccggttgctccacgtggtttgatcaacaacgggaggttgtaaccgtcaacgagactaacgtcgaagaaatcaagtcc |
18954592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 54 - 248
Target Start/End: Original strand, 31944985 - 31945179
Alignment:
| Q |
54 |
taatcagcagaagcacaagtgaaagtgctagttccatcatcataagcgtaactataagcgcgtggacacgcactcttaaaaaactgcgagtaggaacttg |
153 |
Q |
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||||| ||||| | ||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||| || ||||||||||| ||||||| |
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| T |
31944985 |
taatctgcagaggaacaagtgaaggtgctagttccatcatcataagcatagctataagcgcgtggacacgcgctcttgaagaactgcgagtatgaacttg |
31945084 |
T |
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| Q |
154 |
gtttacacgtatccggggaaccataagcgccactgcagcaatattgcggatccccaaacgcttcacacgcgcttttacacgccacgctctcttca |
248 |
Q |
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| T |
31945085 |
gcttacaagtctgcggagttccataagcgccattgcaacaatacaatggatcaccaaaggcttcgcacgcgcttttacatgccacgctcttttca |
31945179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 409
Target Start/End: Original strand, 27975648 - 27975685
Alignment:
| Q |
372 |
agattgtaaccgtcgacgagactaacgtcgaagaaatc |
409 |
Q |
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||||||||||||||||||||||| |||||| ||||||| |
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| T |
27975648 |
agattgtaaccgtcgacgagactcacgtcgtagaaatc |
27975685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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