View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_2 (Length: 887)
Name: NF11183_low_2
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 124 - 877
Target Start/End: Complemental strand, 2656211 - 2655492
Alignment:
| Q |
124 |
aacatggtataaccttacgatctttaatacacttataacttggattatagtgttagaattttgttactttatcttgattattgtaaaaccatattttgca |
223 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
2656211 |
aacatggtataaccttataatctttaatacacttataacttggattataatgttagaattttgttattttatcttgattattgtaaaatcatattttgca |
2656112 |
T |
|
| Q |
224 |
gcagcaggttggagaatgtggtgattcgtgcagcgacacaaacatggtccatactcctgttggtaagtcttttatgaaaagatcatctggtgatatggat |
323 |
Q |
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| T |
2656111 |
gcagcaggttgtagaatgtggtgatt----------------------ccatactcctgttggtaagtcttctatgaaaagatcatccggtgatatggat |
2656034 |
T |
|
| Q |
324 |
tctgttacaaatggaagtggcgaggttggacaagcatctctcacacagccgtcgaagatggtgcatgcgcgtgaaaattgaacccaaagattaaagctga |
423 |
Q |
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| T |
2656033 |
tctgttacaaatggaagtggcgaggttggacaagcatctgtcacacagccgtcaaagatggtgct----cgtgaaaattgaacccaaagattaaagctga |
2655938 |
T |
|
| Q |
424 |
cgtaataatcgttgacgaggatcatctgtttgatgnnnnnnnaatgatgttacctctttgtctacattttctttgtcgttaaaaatcagatggcagatta |
523 |
Q |
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| T |
2655937 |
cgtaataatcgttgacgaggatcatatgtttgatgtttttttaatgatgttacctgtttatctacattttctttgtcgttaataatcagatggcagatta |
2655838 |
T |
|
| Q |
524 |
tgttctgttcatctattatgcaattagtcatttgatttcaagactttg-nnnnnnncaattgctatttcctataatctaatattacgaatccataataaa |
622 |
Q |
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| T |
2655837 |
tgttctgttcatctattatacaattagtcatttgatttcaagactttgtttttcttcaattgctatttgctataatctaatattacgaatccataataaa |
2655738 |
T |
|
| Q |
623 |
agtcattgacatgttttcgtattattttccttcgcggctgataataatttggttcatttgattgattagtctaaaccacaatt-agtcattttgattgat |
721 |
Q |
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| T |
2655737 |
agtcattgacatgttttcgtattattttccttcgctgctaataataatttggttcatttgattgattagtctaaaccacaattcaggccat--------- |
2655647 |
T |
|
| Q |
722 |
cactgattccaataaggcaactcttttaatttataatcacaaattgaaatctccaaatgcagttttacatagcaaaattatttctgcatcaatgtcattc |
821 |
Q |
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| T |
2655646 |
-agtgattccaataaggcaactcttttaatttataatcacaaattgaaatctccaaatgcagttttacatagcaaaattgtttctgcatcaatgtcattc |
2655548 |
T |
|
| Q |
822 |
tgttttaacgaagcaaacttaattttatgaatgcttctccttcttttacgcctatg |
877 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2655547 |
tgtcttaacgaagcaaacttaattttatgaatgcttctccttcttttacgcctatg |
2655492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 228 - 387
Target Start/End: Complemental strand, 47764633 - 47764474
Alignment:
| Q |
228 |
caggttggagaatgtggtgattcgtgcagcgacacaaacatggtccatactcctgttggtaagtcttttatgaaaagatcatctggtgatatggattctg |
327 |
Q |
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||||||| ||||||||| |||||||| |||||||||||||| ||||| ||||||||||| || |||| ||||||||||||||| ||| |||| |||||| |
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| T |
47764633 |
caggttgtagaatgtggcgattcgtgtagcgacacaaacattgtccacactcctgttggcaaatcttctatgaaaagatcatccggtaatatagattctt |
47764534 |
T |
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| Q |
328 |
ttacaaatggaagtggcgaggttggacaagcatctctcacacagccgtcgaagatggtgc |
387 |
Q |
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|| ||||||| |||||||||||||||||||||| | |||||||| ||||||||||||| |
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| T |
47764533 |
caacgaatggaaatggcgaggttggacaagcatctgtgacacagccctcgaagatggtgc |
47764474 |
T |
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