View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_21 (Length: 386)
Name: NF11183_low_21
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 73 - 371
Target Start/End: Complemental strand, 37640596 - 37640298
Alignment:
| Q |
73 |
gtaacggaaatgtggaagaacctagtggagagaagagcgacgaggagcaacggaggaagaaggttgagtgaagtagcaatgtctagaagcttccaagcga |
172 |
Q |
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| T |
37640596 |
gtaacggaaatgtggaagaacctagtggagagaagagcgacgaggagcaacggaggaagaaggttgagtgaagcagcaatgtctagaagcttccaagcga |
37640497 |
T |
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| Q |
173 |
tgggagagtgatggttccagaacaaatgagagactaaacggtgagcgaggtcgacggaagggagagtgacggcggtagagcggagtgttgagatgatttg |
272 |
Q |
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| T |
37640496 |
tgggagagtgatggttccagaacaaatgagagactaaacggtgagcgaggtcgacggaagggagagtgacagcggtggaacggagtgttgagatgatttg |
37640397 |
T |
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| Q |
273 |
cgacgcccatacgttaggatcggtgttgttcatcaaagctgagttggtttggagaagaatcgcgtcccatgggaaacgatcgtagccggcgatggtttg |
371 |
Q |
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| T |
37640396 |
cgacgcccatacgttaggatcggtgttgttcatcaaagctgagttggtttggagaagaatcgcgtcccatgggaaacgatcgtagccggcgatggtttg |
37640298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 73 - 355
Target Start/End: Original strand, 2156744 - 2157028
Alignment:
| Q |
73 |
gtaacggaaatgtggaagaacctagtggagagaagagcgacgaggagcaacggaggaagaaggttgagtgaagtagcaatgtctagaagcttccaagcga |
172 |
Q |
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| T |
2156744 |
gtaacggaaatgtggaagaacatagtggagagaagagcgatgaggagtaacggaggaagaaggttgagtgaagtagcaatgtctagaagcttccaaacgg |
2156843 |
T |
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| Q |
173 |
tgggagagtgatggttccagaacaaatgagagactaaacggtgagcgaggtcgacggaagggagagtgacggcggtagagcggagtgttgagatgatttg |
272 |
Q |
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| T |
2156844 |
tgggagagtgatggttccaaaacaaatgagagactaaacggagagcgaggtcgacggaagggagagtgacggcggaggaacggagtatggaagtgatttg |
2156943 |
T |
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| Q |
273 |
cgacgcccatacgttaggatcg--gtgttgttcatcaaagctgagttggtttggagaagaatcgcgtcccatgggaaacgatcgt |
355 |
Q |
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| T |
2156944 |
cgacgcccatacgttaggacaggtgtgttgttcagcaaagctgagttggtttggcgaagaatcacgtcccatggaaaacgatcgt |
2157028 |
T |
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