View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_23 (Length: 339)
Name: NF11183_low_23
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 29671857 - 29672164
Alignment:
| Q |
14 |
agatgaaaacagaaacactctggtgcatcaatccaaatcatctcagaagaatcttcagcattctttgataaaaccccgaacctcgagactttctccttat |
113 |
Q |
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| T |
29671857 |
agatgaaaacagaaacactctggtgcatcaatccaaatcatctcagaagaatcttcagcattcttggataaaaccccgaacctcgagactttctccttat |
29671956 |
T |
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| Q |
114 |
cgtaaacaacaggcgacccaccacggatcatttcacccaatttaaacacaacttgttgatcaggcacaacaacgaaattctcagtgatcgcgaagtcatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29671957 |
cgtaaacaacaggcgacccaccacggatcatttcacccaatttaaacacaacttgttgatcaggcacaacaacgaaattctcagtgatcgcgaagtcatg |
29672056 |
T |
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| Q |
214 |
catcatagtaggctgctccaacggaatctcaacgtccggagacttaactccggacgcatcaaaacgaaagtatttcaaataaggcttttgaactacgtca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672057 |
catcatagtaggctgctccaacggaatctcaacgtccggagacttaactccggacgcatcaaaacgaaagtatttcaaataaggcttttgaactacgtca |
29672156 |
T |
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| Q |
314 |
tagctcaa |
321 |
Q |
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|||||||| |
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| T |
29672157 |
tagctcaa |
29672164 |
T |
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