View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11183_low_25 (Length: 333)
Name: NF11183_low_25
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 8797916 - 8797608
Alignment:
| Q |
11 |
cacagacgccggtgatgcatgagaattttccagtggggtcttgggagcagagtgttcgtccccatagacggccggaccatgatggtggtacagcgagagc |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8797916 |
cacagtcgccggtgatgcatgagaattttccagtggggtcttgggagcagagtgttcgtccccatacacggccggaccatgatggtggtacagcgagagc |
8797817 |
T |
|
| Q |
111 |
attggactcgcctggttggagaacgaagccggtggtggagaacggttctgtcccggcgccggataaaattcccggccaaactgtgtaaccgcaattgttt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8797816 |
attggactcgcctggttggagaacgaagccggtggtggagaacggttctgtcccggcgccggataaaattcccggccaaactgtgtaaccgcaattgttc |
8797717 |
T |
|
| Q |
211 |
acaattgtgaatgttgttgaatatgaacctgtaataataacatgttgaaaacaacataagaactaagaaaacaacataagacacaaacttttatgtaaac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8797716 |
acaattgtgaatgttgttgaatatgaacctgtaataataacatgttgaaaacaacataagaactaagaaaacaacttaagacacaaacttttatgtaaac |
8797617 |
T |
|
| Q |
311 |
attaaaaac |
319 |
Q |
| |
|
||||||||| |
|
|
| T |
8797616 |
attaaaaac |
8797608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 14039719 - 14039928
Alignment:
| Q |
28 |
catgagaattttccagtggggtcttgggagcagagtgttcgtccccatagacggccggaccatgatggtggtacagcgagagcattggactcgcctggtt |
127 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||| || ||||||||||||||||| ||||| || ||||| || || |||||||| ||||| |||| |
|
|
| T |
14039719 |
catgagaattttccggtggaatcttgagagcagagggtacgtccccatagacggcctgaccacttggggggtacggctagggcattggattcgccgggtt |
14039818 |
T |
|
| Q |
128 |
ggagaacgaagccggtggtggagaacggttctgtcccggcgccggataaaattcccggccaaactgtgtaaccgcaattgtttacaattgtgaatgttgt |
227 |
Q |
| |
|
||||| | || ||||| || ||||| ||| ||| || ||||||||||||||||| |||||||| ||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
14039819 |
ggagagcaaaaccggttgtagagaatggtgttgttcctgcgccggataaaattccaggccaaacagtgtagttgcacttgttaacaattgtgaatgttgt |
14039918 |
T |
|
| Q |
228 |
tgaatatgaa |
237 |
Q |
| |
|
|| ||||||| |
|
|
| T |
14039919 |
tgcatatgaa |
14039928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 242
Target Start/End: Original strand, 18954690 - 18954904
Alignment:
| Q |
28 |
catgagaattttccagtggggtcttgggagcagagtgttcgtccccatagacggccggaccatgatggtggtacagcgagagcattggactcgcctggtt |
127 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||| || ||||| |||||||||||||||||||| || ||||| ||||| | || |||||||| |||| |
|
|
| T |
18954690 |
catgagaattttccggtggaatcttgagagcatagggttcggccccatagacggccggaccacttggggggtacggcgagggtgttcgactcgccgggtt |
18954789 |
T |
|
| Q |
128 |
ggagaacgaagccggtggtggagaacggttctgtcccggcgccggataaaattcccggccaaactgtgtaaccgcaattgtttacaattgtgaatgttgt |
227 |
Q |
| |
|
| ||| | ||||||||||||||||| ||| ||| |||| |||||||||||||| |||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
18954790 |
gaagagcaaagccggtggtggagaagggtgttgtgtcggcaccggataaaattcctggccaaactgtgtatttacagttgttagcaattgtgaatgttgt |
18954889 |
T |
|
| Q |
228 |
tgaatatgaacctgt |
242 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
18954890 |
ggaataagaacctgt |
18954904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 31945441 - 31945513
Alignment:
| Q |
22 |
gtgatgcatgagaattttccagtggggtcttgggagcagagtgttcgtccccatagacggccggaccatgatg |
94 |
Q |
| |
|
|||||||||||||||||||| | |||||| ||||| |||||||| ||||||| ||||||||||| |||| |
|
|
| T |
31945441 |
gtgatgcatgagaattttccggaggggtcggttgagcatagtgttcggccccatatgcggccggaccaagatg |
31945513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University