View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_3 (Length: 804)
Name: NF11183_low_3
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_3 |
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| [»] scaffold0415 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 370 - 786
Target Start/End: Original strand, 13212184 - 13212600
Alignment:
| Q |
370 |
catgatgagaaaagtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattga |
469 |
Q |
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| T |
13212184 |
catgatgagaaaagtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattga |
13212283 |
T |
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| Q |
470 |
gaagattttgaggaactccatggaaaagtgatgaagcattaggatctgctacaagttgttgctgttgctggttctgctgctgttgttgttgacttcccat |
569 |
Q |
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| T |
13212284 |
gaagattttgaggaactccatggaaaagtgatgaagcattaggatctgctacaagttgttgctgttgctggttctgctgctgttgttgttgacttcccat |
13212383 |
T |
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| Q |
570 |
ggttcccggtgaccctaaccctccatttcctggcacattcactggtgtttcttcatcttctagaggtagcctttcataagcagcatttccaaaggaagct |
669 |
Q |
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| T |
13212384 |
ggttcccggtgaccctaaccctccatttcctggcacattcactggtgtttcttcatcttctaaaggtagcctttcataagcagcatttccaaaggaagct |
13212483 |
T |
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| Q |
670 |
gccatgataacaaccggaccggaagctaacaacggtcccaccacgctaccaccgacgacctgtccttgtccaccagctagatatatggctaatcctgacg |
769 |
Q |
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| T |
13212484 |
gccatgataacaaccggaccggaagctaacaacggtcccaccacgctaccaccgacgacctgtccttgtccaccagctagatatatggctaatcctgacg |
13212583 |
T |
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| Q |
770 |
ccgctggtggagcaggc |
786 |
Q |
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| T |
13212584 |
ccgctggtggagcaggc |
13212600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 55 - 290
Target Start/End: Original strand, 13211868 - 13212103
Alignment:
| Q |
55 |
cacatgccaccttctgctgcttcatttggaagcaactaagaacatttttagctgaacaagaaaattaatttaactgttttggatgcaatatcataaaatt |
154 |
Q |
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| T |
13211868 |
cacatgctaccttctgctgcttcatttggaagcaactaagaacatttttagctgaacaagaaaattaatttaactgttttggatgcaatatcataaaatt |
13211967 |
T |
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| Q |
155 |
caaaccccacaaaaaattcatgaatttatacatccttctttcaattcaacatcatcaagtagtcaacttaataccatgatcaaagaaaagtcttcaattt |
254 |
Q |
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| T |
13211968 |
caaaccccacaaaaaattcatgaatttatacatccttctttcaattcaacatcatcaagtagtcaacttaataccatgatcaaagaaaagtcttcaattt |
13212067 |
T |
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| Q |
255 |
aaactaagttataaggagaatgaacaagtgatagat |
290 |
Q |
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| T |
13212068 |
aaactaagttataaggagaatgaacaagtgatagat |
13212103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 410 - 487
Target Start/End: Complemental strand, 13555 - 13478
Alignment:
| Q |
410 |
aaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgaggaactc |
487 |
Q |
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| T |
13555 |
aaaatggaggacgagcacttccacaccaataaccttcatgtagtaattggtatgaattgtgaaaattttgaagaactc |
13478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 410 - 487
Target Start/End: Original strand, 29845934 - 29846011
Alignment:
| Q |
410 |
aaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgaggaactc |
487 |
Q |
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| T |
29845934 |
aaaatggaggacgagcacttccacaccaataaccttcatgtagtaattggtatgaattgtgaaaattttgaagaactc |
29846011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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