View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11183_low_32 (Length: 275)
Name: NF11183_low_32
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 38867703 - 38867442
Alignment:
| Q |
11 |
cagagaccggtatttcctgtaaaactttccctataattctcactagcataaagagggggaatttcaccagaaagctgattttttgacaggttaaagaaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38867703 |
cagagaccggtatttcctgtaaaactttccctataattctcactagcataaagagggggaatttcaccagaaagctgattttttgacaggttaaagaaat |
38867604 |
T |
|
| Q |
111 |
caagcttcaaattctgcaactccattggaatttcaccagaaagtaaattaccagaaagatcaagaaaattaagtgctggcaaggttcctaattcacttgg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38867603 |
caagcttcaaattctgcaactccattggaatttcaccggaaagtaaattaccagaaagatcaagaaaattaagtgctggcaaggttcctaattcacttgg |
38867504 |
T |
|
| Q |
211 |
aatattaccaacaaacctattattagccaaatcaaggtcattgagcttcttccaatcaccaa |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38867503 |
aatattaccaacaaacctattattagccaaatcaaggtcattgagcttcttccaatcaccaa |
38867442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University