View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11183_low_34 (Length: 255)
Name: NF11183_low_34
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 31533693 - 31533925
Alignment:
| Q |
13 |
gagataaatgtttgtagaacagaaaaacatatataccgtaagttg---ctatatgcagcattacacagaagcatgcaacagagtacaaacatacataaat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31533693 |
gagataaatgtttgtagaacagaaaaacatatataccgtaagttgttgctataagcagcattacatagaagcatgcaacagagtacaaacatacataaat |
31533792 |
T |
|
| Q |
110 |
ggtatacatagcagtttttaacttctgcagaagaaaaataaattaactaaatttaaagatggagtaattagtgacacatagtattgaagattgagataaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31533793 |
ggtatacatagcagtttttaacttctgcagaagaaaaataaattaactaaatttaaagatggagtaattagtgacacatagtattgaagattgagataaa |
31533892 |
T |
|
| Q |
210 |
agggcttcacatgttatgtcactggttgaaggt |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31533893 |
agggcttcacatgttatgtcactggttgaaggt |
31533925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University