View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_35 (Length: 253)
Name: NF11183_low_35
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_35 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 33727859 - 33728095
Alignment:
| Q |
17 |
gaagtatccaaatgggacaaggccaaatagagtagctggatctgggtattggaaagcaactggaacagacaagattataacaaatgaaggtagaaaagtt |
116 |
Q |
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| T |
33727859 |
gaagtatccaaatgggacaaggccaaatagagtagctggatctgggtattggaaagcaactggaacagacaagattataacaaatgaaggtagaaaagtt |
33727958 |
T |
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| Q |
117 |
ggtatcaaaaaagcacttgttttttatgttggtaaagctccaaaaggcaccaaaactaattggattatgcatgagtatcgtcttcttgactcttcacgaa |
216 |
Q |
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| T |
33727959 |
ggtatcaaaaaagcacttgttttttatgttggtaaagctccaaaaggcaccaaaactaattggattatgcatgagtatcgtcttcttgattcttcacgaa |
33728058 |
T |
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| Q |
217 |
acaacggtggcaccaaggtattatatacattcttttt |
253 |
Q |
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| T |
33728059 |
acaacggtggcaccaaggtattatatacattcatttt |
33728095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 28614848 - 28614891
Alignment:
| Q |
158 |
aaaaggcaccaaaactaattggattatgcatgagtatcgtcttc |
201 |
Q |
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| T |
28614848 |
aaaaggcaccaaaactgattggatgatgcatgagtttcgtcttc |
28614891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 28629373 - 28629416
Alignment:
| Q |
158 |
aaaaggcaccaaaactaattggattatgcatgagtatcgtcttc |
201 |
Q |
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| T |
28629373 |
aaaaggcaccaaaactgattggatgatgcatgagtttcgtcttc |
28629416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 20701715 - 20701911
Alignment:
| Q |
21 |
tatccaaatgggacaaggccaaatagagtagctggatctgggtattggaaagcaactggaacagacaagattataacaaatgaaggtagaaaagttggta |
120 |
Q |
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| T |
20701715 |
tatccaaatggttctagaccaaacagagttgctggttctggttattggaaagccacaggaacagacaaaattatcacaactgaaggtagaaaagttggca |
20701814 |
T |
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| Q |
121 |
tcaaaaaagcacttgttttttatgttggtaaagctccaaaaggcaccaaaactaattggattatgcatgagtatcgtcttcttgactcttcacgaaa |
217 |
Q |
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| T |
20701815 |
taaaaaaagcacttgttttctacattggcaaagcaccaaaaggaacaaaaactaattggattatgcatgagtatcgtcttcttgacgcttcgcgaaa |
20701911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 39492837 - 39492922
Alignment:
| Q |
115 |
ttggtatcaaaaaagcacttgttttttatgttggtaaagctccaaaaggcaccaaaactaattggattatgcatgagtatcgtctt |
200 |
Q |
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| T |
39492837 |
ttggtataaagaaagcactcgttttctatgctggcaaagctcccaaaggaattaaaaccaattggatcatgcatgagtatcgtctt |
39492922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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