View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_36 (Length: 253)
Name: NF11183_low_36
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 3652559 - 3652785
Alignment:
| Q |
19 |
aacttattctcaaagctccttccaaatgttcctgtcttatttatctccaaccccttcattttctcaaaactacacaactttattatattttcaatcacac |
118 |
Q |
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| T |
3652559 |
aacttattctcaaagttccttccaaatgttcctgtattatttatctccaaccccttcattttctcaaaactacacaactttattatattttcaatcacac |
3652658 |
T |
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| Q |
119 |
cctcactttcctcctccaatgtaaaaggacaatccaaaaactcagccannnnnnncaagtgaaattttaaatcttctttcatgtcctcatacttcnnnnn |
218 |
Q |
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| T |
3652659 |
cctcactttcctcctccaatgtaaaaggacgatccaaaaactcagccatttttttcaagtgaaattttaaatcttctttcatgtcctcatacttcaaaaa |
3652758 |
T |
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| Q |
219 |
nngaacattttttggtctctctctgct |
245 |
Q |
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|||||||||||||||||||| |||| |
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| T |
3652759 |
aagaacattttttggtctctctttgct |
3652785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 1626447 - 1626544
Alignment:
| Q |
64 |
tccaaccccttcattttctcaaaactacacaactttattatattttcaatcacaccctcactttcctcctccaatgtaaaaggacaatccaaaaactc |
161 |
Q |
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| T |
1626447 |
tccaatcctttcatcttttcaaagctacataaattgattatattttcaatcacaccattactttcttcctcttgagtaaaaggacaacccaaaaactc |
1626544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 1617915 - 1617994
Alignment:
| Q |
82 |
tcaaaactacacaactttattatattttcaatcacaccctcactttcctcctccaatgtaaaaggacaatccaaaaactc |
161 |
Q |
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| T |
1617915 |
tcaaagctacataaattgataatattttcaatcacaccattactttcctcctcttgagtaaaaggacaacccaaaaactc |
1617994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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