View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_38 (Length: 253)
Name: NF11183_low_38
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 13397798 - 13398036
Alignment:
| Q |
1 |
cagctgctggagtgtttgctttaacaacagttttcttagctgctggattatacctaacaatacttcgtgcacaaagaatgtcagaggtggtagcaactgt |
100 |
Q |
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| T |
13397798 |
cagcagctggagtgtttgctttaacaacagttttcatagctgctggattatacctaacaatacttcgtgcacaaagaatgtcagaggtggtagcaactgt |
13397897 |
T |
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| Q |
101 |
tggaagagaggttctagaagcttctaatttctttgcttttcgaccaagatcacctcaaaggcatatcacaactgttgcaagggagaaccctaaaacaata |
200 |
Q |
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| T |
13397898 |
tggaagagaggttctagaagcttctaatttctttgcttttccaccaagatcacctcaaaggcatatcacaactgttgcaagggagaaccctaaaacaata |
13397997 |
T |
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| Q |
201 |
gagtcaataaatttgtagagagtatagtttgatcctttg |
239 |
Q |
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| T |
13397998 |
gagtcaataaatttgtagagagtatagtttgatcctttg |
13398036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 13394603 - 13394807
Alignment:
| Q |
1 |
cagctgctggagtgtttgctttaacaacagttttcttagctgctggattatacctaacaatacttcgtgcacaaagaatgtcagaggtggtagcaactgt |
100 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| |||| | | |||| ||| |
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| T |
13394603 |
cagctgcaggagtgtttgctttaacaacagttttcctagctgctggtttatacctaacagcacttcgtgcacaaagaatgtctgaggagcttgcaattgt |
13394702 |
T |
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| Q |
101 |
tggaagagaggttctagaagcttctaatttctttgcttttcgaccaagatcacc------tcaaaggcatatcacaactgttgcaagggagaaccctaaa |
194 |
Q |
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| T |
13394703 |
tagaagagaggttcttgaagcttctaccttttatgcttctccaccaagatcacctcaaagtcaaagacatatttcaactgttgcaagagagaaccctaca |
13394802 |
T |
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| Q |
195 |
acaat |
199 |
Q |
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||||| |
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| T |
13394803 |
acaat |
13394807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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