View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11183_low_4 (Length: 663)

Name: NF11183_low_4
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11183_low_4
NF11183_low_4
[»] chr8 (1 HSPs)
chr8 (20-648)||(36373809-36374449)


Alignment Details
Target: chr8 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 20 - 648
Target Start/End: Complemental strand, 36374449 - 36373809
Alignment:
Q  20 gataattagataataaataacatacctgaattacatacaatagacatgatatggataaaaaacaaattagccaaaagaataaaaccaatttaatgcaagg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36374449 gataattagataataaataacatacctgaattacatacaatagacatgatatggataaaaaacaaattagccaaaagaataaaaccaatttaatgcaagg 36374350  T
Q  120 tgacaaacttttttcttgcctaaaagtgcactgacaagaccaccaacactgatctcaaggtgatacgattccacaccctccctaacagcagagacaggca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36374349 tgacaaacttttttcttgcctaaaagtgcactgacaagaccaccaacactgatctcaaggtgatacgattccacaccctccctaacagcagagacaggca 36374250  T
Q  220 acctgttagctaccaccaacaaacgttgtttgcgaggcctatcatccgcaaacaacgtttccgctacctcttcctcattatcattctcatttatgaatga 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  36374249 acctgttagctaccaccaacaaacgttgtttgcgaggcctatcatccgcaaacaacgtttccgcgacctcttcctcattgtcattctcatttatgaatga 36374150  T
Q  320 atcactgtaaagttgctctccctctttgccaccatctcttccgtcctcggccgattgagtataccggctcgatttccttagctctctttctctcaaaagc 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36374149 atcactgtaaagttgctctccctctttgccaccatctcttccgtcctcggccgattgagtataccggctcgatttccttagttctctttctctcaaaagc 36374050  T
Q  420 ctttccaatctcgacctcggtgttaaaggaagactgtgattgttcccctgcatacgcctgacctgaaattttccattatttgaacttattttacagtcca 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36374049 ctttccaatctcgacctcggtgttaaaggaagactgtgattgttcccctgcatacgcctgacctgaaattttccattatttgaacttattttacagtcca 36373950  T
Q  520 gtacaaaataacagtcgataatgttcaatctatgaagcact------------gacacagacgtcagacacaatactggtacaaattttgaaaaattgaa 607  Q
    ||||||||||||||||||||||||| |||||||||||||||            |||||||||||||||||||||| ||||||||||||||||||||||||    
T  36373949 gtacaaaataacagtcgataatgtttaatctatgaagcactgacagagacactgacacagacgtcagacacaatattggtacaaattttgaaaaattgaa 36373850  T
Q  608 gtaatcacacgtgccgtgtccgtgctccagagtgttcaatc 648  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  36373849 gtaatcacacttgccgtgtccgtgctccagagtgttcaatc 36373809  T

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