View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11183_low_42 (Length: 249)

Name: NF11183_low_42
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11183_low_42
NF11183_low_42
[»] chr6 (10 HSPs)
chr6 (21-235)||(11132898-11133112)
chr6 (19-231)||(11196631-11196843)
chr6 (19-231)||(11161045-11161257)
chr6 (19-231)||(11199796-11200008)
chr6 (19-175)||(11156234-11156390)
chr6 (20-211)||(11275882-11276073)
chr6 (19-175)||(11209356-11209512)
chr6 (60-231)||(11241511-11241683)
chr6 (20-163)||(11170546-11170689)
chr6 (21-163)||(11314783-11314925)
[»] scaffold1207 (1 HSPs)
scaffold1207 (20-211)||(816-1007)
[»] chr7 (1 HSPs)
chr7 (21-205)||(7877783-7877967)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 11133112 - 11132898
Alignment:
Q  21 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11133112 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttcttgaggaagcataaaattgacattagtggagatc 11133013  T
Q  121 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgtttgcatcaagg 220  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11133012 gaaaagcccttagacggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgtttgcatcaagg 11132913  T
Q  221 gatagatttcttctc 235  Q
    |||||||||||||||    
T  11132912 gatagatttcttctc 11132898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 11196843 - 11196631
Alignment:
Q  19 caggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggaga 118  Q
    ||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||    
T  11196843 caggagacactcaccttgggggacaagactttgataatacaatggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggaga 11196744  T
Q  119 tccaaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgtttgcatcaa 218  Q
    ||||| |||||||||| ||||||||||||| || ||||||||||| |||||||||||    ||||||  |||||| ||||||||||   ||||  |||||    
T  11196743 tccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaaaaggatactttcttccaatactacgaccaccattgagatagggagtttaaatcaa 11196644  T
Q  219 gggatagatttct 231  Q
    || ||||||||||    
T  11196643 ggtatagatttct 11196631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 11161257 - 11161045
Alignment:
Q  19 caggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggaga 118  Q
    ||||||| ||||||||  ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||    
T  11161257 caggagacactcaccttaggggacaagactttgataatacaatggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggaga 11161158  T
Q  119 tccaaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgtttgcatcaa 218  Q
    ||||| |||||||||| ||||||| ||||| || ||||||||||| |||||||||||    ||||||  |||||| |||||||||||  ||||  |||||    
T  11161157 tccaagagcccttaggaggttgaactctgcttgcgagaaagcaaaaaggatactttcttccaatactacgaccaccattgagatagagagtttaaatcaa 11161058  T
Q  219 gggatagatttct 231  Q
    || ||||||||||    
T  11161057 ggaatagatttct 11161045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 11200008 - 11199796
Alignment:
Q  19 caggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggaga 118  Q
    ||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||    
T  11200008 caggagacactcaccttgggggacaagactttgataatacaatggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggaga 11199909  T
Q  119 tccaaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgtttgcatcaa 218  Q
    ||||| |||||||||| ||| ||||||||| || ||||||||||| |||||||||||    ||||||  |||||| |||||||||||  ||||  |||||    
T  11199908 tccaagagcccttaggaggtagaagtctgcttgcgagaaagcaaaaaggatactttcttccaatactacgaccaccattgagatagagagtttaaatcaa 11199809  T
Q  219 gggatagatttct 231  Q
    ||  |||||||||    
T  11199808 ggtttagatttct 11199796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 11156390 - 11156234
Alignment:
Q  19 caggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggaga 118  Q
    ||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||    
T  11156390 caggagacactcaccttgggggacaagactttgataatacaatggtgaaccattttgtgaatgagttctcgaggaagtataaaatcgacattagtggaga 11156291  T
Q  119 tccaaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttc 175  Q
    ||||| |||||||||| ||||||||||||| || ||||||||||| |||||||||||    
T  11156290 tccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaaaaggatactttc 11156234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 11276073 - 11275882
Alignment:
Q  20 aggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagat 119  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||    
T  11276073 aggagacactcacctcgggggacaagactttgataatgcaatggtgaaccattttgtgaaagagttcttgaggaagcataaaaatgacattagtggagat 11275974  T
Q  120 ccaaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgttt 211  Q
    |||| |||| ||||| || ||||| |||| || |||| || ||| |||||||||||    |||| |||||| || |||||||||||||||||    
T  11275973 ccaagagccattaggaggctgaagactgcttgcgagagagtaaaaaggatactttctgtcaatagtgagactaccattgagatagaatgttt 11275882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 11209512 - 11209356
Alignment:
Q  19 caggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggaga 118  Q
    ||||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| ||||||| | ||||| |||||||||||| |    
T  11209512 caggagacactcacctcgggggacaagactttgataatgcaatggtgaaccattttgtgaaagagttcttgaggaaggaaaaaatggacattagtggaaa 11209413  T
Q  119 tccaaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttc 175  Q
    ||||| |||||||||| || ||||| |||| || |||| |||||| |||||||||||    
T  11209412 tccaagagcccttaggaggctgaagactgcttgcgagagagcaaaaaggatactttc 11209356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 11241511 - 11241683
Alignment:
Q  60 atggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatccaaaagcccttaggcggttgaagtctgcatgtgagaaag 159  Q
    |||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||| |||||||||| ||||||||||||| || |||||||    
T  11241511 atggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtagagatccaagagcccttaggaggttgaagtctgcttgcgagaaag 11241610  T
Q  160 c-aaagaggatactttccagtaatactgagaccacaattgagatagaatgtttgcatcaagggatagatttct 231  Q
    | ||| ||||||||||     ||||||  |||||| |||||||||||  ||||  ||||||| ||||||||||    
T  11241611 caaaaaaggatactttattccaatactacgaccaccattgagatagagagtttaaatcaaggtatagatttct 11241683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 11170689 - 11170546
Alignment:
Q  20 aggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagat 119  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| ||| || |||||| | |||||||||||||||    
T  11170689 aggagacactcacctcgggggacaagactttgataatgcaatggtgaaccattttgtgaaagagttcttgagaaaacataaactcgacattagtggagat 11170590  T
Q  120 ccaaaagcccttaggcggttgaagtctgcatgtgagaaagcaaa 163  Q
    |||| |||| ||||| || ||||| |||| || |||| ||||||    
T  11170589 ccaagagccattaggaggctgaagactgcttgcgagagagcaaa 11170546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 11314783 - 11314925
Alignment:
Q  21 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 120  Q
    ||||| |||||||| ||||||||||||||  |||| |||||||||||  |||| ||| ||| ||||  || || | ||||||| |||||||||||||||     
T  11314783 ggagacactcaccttgggggacaagacttcaataatacaatggtgaaatattttgtggaagtgttccggaagaggtataaaatagacattagtggagatt 11314882  T
Q  121 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaa 163  Q
     || | |||||||| |||||||||| || || |||||||||||    
T  11314883 taacatcccttaggaggttgaagtcagcttgcgagaaagcaaa 11314925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 1007 - 816
Alignment:
Q  20 aggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagat 119  Q
    |||||| ||||||||| |||| ||||||||||||||| |||||||||||||||| ||||||| |||||  |||||| ||||||| |||||||||||||||    
T  1007 aggagacactcacctcagggggcaagactttgataacgcaatggtgaaccattttgtgaaagtgttcttaaggaagtataaaatcgacattagtggagat 908  T
Q  120 ccaaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgttt 211  Q
    |||| |||| ||||| || ||||| |||| ||||||| | |||| |||||||||||    |||||| |||| || ||||||||||| |||||    
T  907 ccaagagccgttaggaggctgaagactgcttgtgagagatcaaaaaggatactttctgtcaatacttagactaccattgagatagagtgttt 816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 7877783 - 7877967
Alignment:
Q  21 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 120  Q
    |||||||||||||| || ||| | ||||||||||||| |||| |||||||||| ||||  |||||   ||||||| ||||| | |||||| ||||| | |    
T  7877783 ggagatactcacctaggtggagaggactttgataacagaatgttgaaccatttagtgatggagtttaagaggaagaataaagtggacattggtggaaacc 7877882  T
Q  121 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagataga 205  Q
    | |  ||||||||| ||||||   ||||||||||||  || || |||| ||| ||   | |||||||||| |||||||| |||||    
T  7877883 cgagggcccttaggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagactacaattgacataga 7877967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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