View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11183_low_43 (Length: 247)

Name: NF11183_low_43
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11183_low_43
NF11183_low_43
[»] chr6 (12 HSPs)
chr6 (13-236)||(33305257-33305480)
chr6 (13-220)||(33263411-33263618)
chr6 (13-228)||(33286319-33286534)
chr6 (13-148)||(33401394-33401529)
chr6 (13-148)||(31561987-31562122)
chr6 (13-114)||(33058337-33058438)
chr6 (13-220)||(33643711-33643918)
chr6 (55-220)||(33388857-33389022)
chr6 (13-234)||(9167540-9167755)
chr6 (13-228)||(33272573-33272788)
chr6 (13-103)||(33359489-33359579)
chr6 (13-98)||(33410713-33410798)
[»] chr2 (1 HSPs)
chr2 (13-148)||(17440001-17440136)
[»] chr4 (7 HSPs)
chr4 (13-148)||(31503304-31503439)
chr4 (82-148)||(31498070-31498136)
chr4 (55-132)||(31478170-31478247)
chr4 (57-114)||(31484023-31484080)
chr4 (55-139)||(31527234-31527318)
chr4 (55-114)||(31149175-31149234)
chr4 (57-114)||(31158051-31158108)
[»] scaffold1408 (1 HSPs)
scaffold1408 (13-146)||(1402-1535)
[»] scaffold0428 (1 HSPs)
scaffold0428 (13-146)||(7148-7281)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 33305257 - 33305480
Alignment:
Q  13 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305257 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 33305356  T
Q  113 attcatgccaatcaacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305357 attcatgccaatcaacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcat 33305456  T
Q  213 ttttgacacgtgttcagcgttcat 236  Q
    ||||||||||||||||||||||||    
T  33305457 ttttgacacgtgttcagcgttcat 33305480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 33263411 - 33263618
Alignment:
Q  13 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 112  Q
    |||||||||||| |||||||||||  ||| |||||  ||   ||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||    
T  33263411 accttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggat 33263510  T
Q  113 attcatgccaatcaacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcat 212  Q
    |||||| ||| ||||||||| | ||||||||||||| ||  | ||| |||||||||||  ||   |||||| ||| |||||| |||||||||||| ||||    
T  33263511 attcatcccactcaacatatctcaatttgtttgaaagacaacttgggcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcat 33263610  T
Q  213 ttttgaca 220  Q
    ||||||||    
T  33263611 ttttgaca 33263618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 33286319 - 33286534
Alignment:
Q  13 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 112  Q
    |||||||| ||| |||||||||||| ||| ||||| || |  ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  33286319 accttcttctttctccatagttgtttaatgttgctactatgcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatatttgaaaggat 33286418  T
Q  113 attcatgccaatcaacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcat 212  Q
    || ||  ||| | ||||||| ||||||||||||||| |||| || | ||||| |||||   | ||||  || ||| |||||| |||||||||||| ||||    
T  33286419 atccagtccactgaacatatcttaatttgtttgaaagactcaataggcttccggagatattcacaccccacatgatgatgagcaatctaagattactcat 33286518  T
Q  213 ttttgacacgtgttca 228  Q
    |||||||| |||||||    
T  33286519 ttttgacaagtgttca 33286534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 33401394 - 33401529
Alignment:
Q  13 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 112  Q
    |||||||||||| |||||||||||| ||| ||||| | |   ||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  33401394 accttcttgtttttccatagttgtttaatgttgctacaccacaagatcaattctacaagttcattggggtgaaaacttgttggcaaatacttgaaaggat 33401493  T
Q  113 attcatgccaatcaacatattttaatttgtttgaaa 148  Q
    |||||||||||||||||||| |||||| ||||||||    
T  33401494 attcatgccaatcaacatatcttaattcgtttgaaa 33401529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 31562122 - 31561987
Alignment:
Q  13 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 112  Q
    |||||||||||||||||||||||   |||  |||| |||   |||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||    
T  31562122 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 31562023  T
Q  113 attcatgccaatcaacatattttaatttgtttgaaa 148  Q
    ||||| |||| ||||||||| |||||||||| ||||    
T  31562022 attcaagccactcaacatatcttaatttgttcgaaa 31561987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 33058337 - 33058438
Alignment:
Q  13 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 112  Q
    |||||||||||| |||||||||||| ||| |||||   | | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  33058337 accttcttgtttttccatagttgtttaatgttgctctccgtcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttggaaggat 33058436  T
Q  113 at 114  Q
    ||    
T  33058437 at 33058438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 33643918 - 33643711
Alignment:
Q  13 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 112  Q
    |||||||||||| |||||||||||  ||| |||||  |||| |||| |||||||||||||| |||||| |||||||||||||||||| || | |||||||    
T  33643918 accttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatggcaaacacatgaaaggat 33643819  T
Q  113 attcatgccaatcaacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcat 212  Q
    |   |||||| ||||||||| ||||||  ||||||| ||  | ||| ||| || ||||   || |||| |||| | ||| || |||||||||||| ||||    
T  33643818 acatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttctaagatatgccaaccgcactttatgatcagcaatctaagattactcat 33643719  T
Q  213 ttttgaca 220  Q
    ||||||||    
T  33643718 ttttgaca 33643711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 33388857 - 33389022
Alignment:
Q  55 aagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaaaactcc 154  Q
    |||||||| |||||||| ||| ||||||||||| |||||||||||||||| |||||||| | || ||| ||||||||| ||||| ||||||||| ||||     
T  33388857 aagatcaactctacaagatcactggggtgaaaacttgatggcaaatacttgaaaggataataattccactcaacatatcttaatgtgtttgaaagactcg 33388956  T
Q  155 atggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcatttttgaca 220  Q
    |||| || | || |||   |  |||  |||||| |||||| |||||||||||| ||||||||||||    
T  33388957 atgggctacttgggatattcggaccccacttgatgatgagtaatctaagattactcatttttgaca 33389022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 9167540 - 9167755
Alignment:
Q  13 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 112  Q
    ||||| |||||| |||||||||||| ||| ||||| |  || ||||||| || |||||||||||||| ||||||| | |||||||||||||| |||||||    
T  9167540 acctttttgtttttccatagttgtttaatgttgctccagttcaagatcagttgtacaagttcattggcgtgaaaactcgatggcaaatacttgaaaggat 9167639  T
Q  113 attcatgccaatcaacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcat 212  Q
    ||  || ||| |||| |||| |||||| ||| |||| ||| |||||      | ||||   || |||||| |||| |||||| ||||||||| || ||||    
T  9167640 atcgataccactcaagatatcttaattcgttcgaaagactacatgg------taagatattccaaccgtatttgatgatgagcaatctaagactactcat 9167733  T
Q  213 ttttgacacgtgttcagcgttc 234  Q
    |||||||| ||||||| |||||    
T  9167734 ttttgacaagtgttcaacgttc 9167755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 33272573 - 33272788
Alignment:
Q  13 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 112  Q
    |||||||||||| ||||||||||||  || | |||  || | ||||||||||||| ||| ||||||||||||||| ||| ||| | | |||| |||||||    
T  33272573 accttcttgtttttccatagttgtttgatgtcgctattcatcaagatcaattctataaggtcattggggtgaaaacttgttggtagacacttgaaaggat 33272672  T
Q  113 attcatgccaatcaacatattttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcat 212  Q
    || ||| ||| ||||||||| |||||   |||||||  ||| || |||| |||| |||   || |||| ||||||  ||||| |||||||||||| ||||    
T  33272673 atccatcccactcaacatatcttaatgcatttgaaaggctcgatagactacctgggatattccgaccgcacttgattatgagcaatctaagattactcat 33272772  T
Q  213 ttttgacacgtgttca 228  Q
    ||||| || |||||||    
T  33272773 ttttgccaagtgttca 33272788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 33359489 - 33359579
Alignment:
Q  13 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatact 103  Q
    |||||||||||| |||||||||||| |||  ||||  |||| ||||||||||||||||||||||||| || |||| ||| |||||||||||    
T  33359489 accttcttgtttttccatagttgtttaatgctgcttttcttcaagatcaattctacaagttcattggagttaaaacttgttggcaaatact 33359579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 33410713 - 33410798
Alignment:
Q  13 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaa 98  Q
    ||||||||| || ||||||||||||  |   ||||  |||| ||||||||||| ||||||||||| ||||||||| || |||||||    
T  33410713 accttcttgcttttccatagttgtttgaagctgctattcttcaagatcaattcaacaagttcattagggtgaaaacttaatggcaa 33410798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 17440136 - 17440001
Alignment:
Q  13 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 112  Q
    |||||||||||| ||||||| | || ||| ||||| |  |  || ||||||||||| |||||||||||||||||| ||| |||||||||||| |||||||    
T  17440136 accttcttgtttttccataggtttttaatgttgctcccatccaaaatcaattctactagttcattggggtgaaaacttgttggcaaatacttgaaaggat 17440037  T
Q  113 attcatgccaatcaacatattttaatttgtttgaaa 148  Q
    ||| | |||| ||||||||| |||||||||| ||||    
T  17440036 atttaggccactcaacatatcttaatttgttcgaaa 17440001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 31503439 - 31503304
Alignment:
Q  13 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 112  Q
    |||||||||| |  ||||| |||||| ||  |||| ||||| |||||||| || ||||||| ||| || |||||| |||| ||||||||||| |||||||    
T  31503439 accttcttgtcttcccataattgttcgatgctgctactcttcaagatcaactcaacaagttgatttggctgaaaacttgacggcaaatacttgaaaggat 31503340  T
Q  113 attcatgccaatcaacatattttaatttgtttgaaa 148  Q
    |||||  ||| ||||||||| |||||| ||| ||||    
T  31503339 attcactccattcaacatatcttaattcgttagaaa 31503304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 31498136 - 31498070
Alignment:
Q  82 tgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaa 148  Q
    |||||||||||||| |||||| | ||||||||||||||||| |||| |||| |||||||||| ||||    
T  31498136 tgaaaatttgatggtaaatacatgaaaggatattcatgccactcaaaatatcttaatttgttggaaa 31498070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 31478247 - 31478170
Alignment:
Q  55 aagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatat 132  Q
    ||||||||||| ||||||| ||| | || |||| | |||||||||||||| ||||||||||||  ||| |||||||||    
T  31478247 aagatcaattcaacaagttgattagagtcaaaactcgatggcaaatacttgaaaggatattcactccactcaacatat 31478170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 31484080 - 31484023
Alignment:
Q  57 gatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatat 114  Q
    ||||||||| ||||||| ||||||  |||||||||||||||||||| | |||||||||    
T  31484080 gatcaattcaacaagttgattgggccgaaaatttgatggcaaatacatgaaaggatat 31484023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 31527234 - 31527318
Alignment:
Q  55 aagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatt 139  Q
    |||||||| || |||||||  | ||| |||||| |||||||||||||| | |||||||||||  |||| ||||||||| ||||||    
T  31527234 aagatcaactcaacaagttggtagggttgaaaacttgatggcaaatacatgaaaggatattcccgccactcaacatatcttaatt 31527318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 31149175 - 31149234
Alignment:
Q  55 aagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatat 114  Q
    ||||||||||| ||||||| ||| ||  ||||| |||||||||||||||| |||||||||    
T  31149175 aagatcaattcgacaagttgattaggcagaaaacttgatggcaaatacttgaaaggatat 31149234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 31158051 - 31158108
Alignment:
Q  57 gatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatat 114  Q
    ||||||||| ||||||| |||||| ||||||  || |||||||||||| |||||||||    
T  31158051 gatcaattcaacaagttgattgggctgaaaacatgctggcaaatacttgaaaggatat 31158108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 1402 - 1535
Alignment:
Q  13 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 112  Q
    |||||||||||| |||||||||||| |||   ||| |||   || ||||||||||||||||||   ||||||||| ||||||||| |||||| |||||||    
T  1402 accttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatggcagatacttgaaaggat 1501  T
Q  113 attcatgccaatcaacatattttaatttgtttga 146  Q
    || ||  ||| | |||||||  ||||||||||||    
T  1502 atccagtccattgaacatatcgtaatttgtttga 1535  T

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Target: scaffold0428 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 7148 - 7281
Alignment:
Q  13 accttcttgtttgtccatagttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggat 112  Q
    |||||||||||| |||||||||||| |||   ||| |||   || ||||||||||||||||||   ||||||||| ||||||||| |||||| |||||||    
T  7148 accttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatggcagatacttgaaaggat 7247  T
Q  113 attcatgccaatcaacatattttaatttgtttga 146  Q
    || ||  ||| | |||||||  ||||||||||||    
T  7248 atccagtccattgaacatatcgtaatttgtttga 7281  T

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